LmjF.31.0100 | O-sialoglycoprotein endopeptidase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.31.0100OTHER0.9849560.0031620.011882
No Results

  • Fasta :-

    >LmjF.31.0100 MKRTLSLGIEGSANKIGVGVVDQSGTVLSNVRETYITPPGSGFLPRETAIHHSQHVLQVV QRAMHDAAVTPADIDIISYTKGPGMGGPLSVGCTVAKTLSLLWGKPLVGVNHCVGHIEMG RVVTKSENPVVLYVSGGNTQVIAYADHRYRIFGETIDIAVGNCLDRVARLLNISNDPAPG YNIEQKAKKGKCYIRLPYTVKGMDMSFTGILSYIEQLVHHPQFSDSDVREMSKKRHKAAP SLTSMPVPPGETLNTDDICFSLQETIFAMLVEVTERAMSQIKTSDVLIVGGVGCNRRLQE MMQLMAAERGGRCFGMDQRYCIDNGCMIAYAGLLQYLSGSFTTMAEATVTQRFRTDEVYV TWRD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/89 Sequence name : 89 Sequence length : 364 VALUES OF COMPUTED PARAMETERS Coef20 : 3.750 CoefTot : 0.128 ChDiff : 1 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.335 1.418 0.200 0.519 MesoH : -0.015 0.462 -0.222 0.286 MuHd_075 : 3.611 3.081 2.754 0.610 MuHd_095 : 34.302 17.905 8.921 6.665 MuHd_100 : 25.020 14.065 5.853 4.667 MuHd_105 : 14.976 8.481 2.363 2.640 Hmax_075 : 7.583 11.783 0.596 3.955 Hmax_095 : 15.200 13.037 2.773 5.198 Hmax_100 : 5.800 11.800 -0.123 3.480 Hmax_105 : 7.200 9.100 -0.271 2.970 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8985 0.1015 DFMC : 0.9102 0.0898
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 364 LmjF.31.0100 MKRTLSLGIEGSANKIGVGVVDQSGTVLSNVRETYITPPGSGFLPRETAIHHSQHVLQVVQRAMHDAAVTPADIDIISYT 80 KGPGMGGPLSVGCTVAKTLSLLWGKPLVGVNHCVGHIEMGRVVTKSENPVVLYVSGGNTQVIAYADHRYRIFGETIDIAV 160 GNCLDRVARLLNISNDPAPGYNIEQKAKKGKCYIRLPYTVKGMDMSFTGILSYIEQLVHHPQFSDSDVREMSKKRHKAAP 240 SLTSMPVPPGETLNTDDICFSLQETIFAMLVEVTERAMSQIKTSDVLIVGGVGCNRRLQEMMQLMAAERGGRCFGMDQRY 320 CIDNGCMIAYAGLLQYLSGSFTTMAEATVTQRFRTDEVYVTWRD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.31.0100 2 -----MK|RT 0.059 . LmjF.31.0100 3 ----MKR|TL 0.231 . LmjF.31.0100 15 IEGSANK|IG 0.059 . LmjF.31.0100 32 TVLSNVR|ET 0.081 . LmjF.31.0100 46 GSGFLPR|ET 0.133 . LmjF.31.0100 62 VLQVVQR|AM 0.131 . LmjF.31.0100 81 DIISYTK|GP 0.067 . LmjF.31.0100 97 VGCTVAK|TL 0.064 . LmjF.31.0100 105 LSLLWGK|PL 0.064 . LmjF.31.0100 121 GHIEMGR|VV 0.136 . LmjF.31.0100 125 MGRVVTK|SE 0.093 . LmjF.31.0100 148 IAYADHR|YR 0.093 . LmjF.31.0100 150 YADHRYR|IF 0.108 . LmjF.31.0100 166 VGNCLDR|VA 0.079 . LmjF.31.0100 169 CLDRVAR|LL 0.220 . LmjF.31.0100 186 GYNIEQK|AK 0.065 . LmjF.31.0100 188 NIEQKAK|KG 0.062 . LmjF.31.0100 189 IEQKAKK|GK 0.118 . LmjF.31.0100 191 QKAKKGK|CY 0.082 . LmjF.31.0100 195 KGKCYIR|LP 0.090 . LmjF.31.0100 201 RLPYTVK|GM 0.072 . LmjF.31.0100 229 FSDSDVR|EM 0.090 . LmjF.31.0100 233 DVREMSK|KR 0.061 . LmjF.31.0100 234 VREMSKK|RH 0.102 . LmjF.31.0100 235 REMSKKR|HK 0.168 . LmjF.31.0100 237 MSKKRHK|AA 0.074 . LmjF.31.0100 276 LVEVTER|AM 0.100 . LmjF.31.0100 282 RAMSQIK|TS 0.066 . LmjF.31.0100 296 GGVGCNR|RL 0.076 . LmjF.31.0100 297 GVGCNRR|LQ 0.132 . LmjF.31.0100 309 QLMAAER|GG 0.087 . LmjF.31.0100 312 AAERGGR|CF 0.226 . LmjF.31.0100 319 CFGMDQR|YC 0.099 . LmjF.31.0100 352 EATVTQR|FR 0.085 . LmjF.31.0100 354 TVTQRFR|TD 0.095 . LmjF.31.0100 363 EVYVTWR|D- 0.112 . ____________________________^_________________

  • Fasta :-

    >LmjF.31.0100 ATGAAGCGCACACTGTCCCTCGGGATCGAGGGAAGCGCCAATAAGATCGGTGTGGGGGTG GTGGACCAGAGCGGTACGGTGCTCTCTAACGTGCGCGAAACCTACATCACCCCACCTGGG TCCGGGTTCCTGCCGCGCGAGACGGCCATCCACCACTCCCAGCACGTGCTGCAGGTCGTA CAGCGCGCCATGCACGATGCCGCGGTGACGCCGGCCGACATCGACATCATCTCGTACACC AAGGGCCCTGGCATGGGCGGGCCGCTCTCTGTCGGCTGCACCGTGGCCAAAACACTGTCC CTCCTGTGGGGGAAGCCGCTGGTGGGCGTCAACCACTGCGTCGGGCACATTGAGATGGGC CGCGTCGTCACGAAGAGCGAGAACCCCGTGGTGCTGTACGTCAGCGGGGGCAACACGCAA GTCATCGCCTACGCTGATCACCGCTACCGCATTTTCGGTGAGACGATCGACATTGCCGTG GGCAACTGCCTGGACCGTGTTGCCCGCCTCCTCAACATCTCAAACGACCCGGCACCGGGC TACAACATTGAACAGAAGGCCAAGAAGGGCAAGTGCTACATCCGCTTGCCCTACACGGTG AAGGGAATGGACATGTCGTTCACCGGCATCCTCTCCTACATCGAACAGCTTGTGCACCAC CCTCAATTCTCTGACTCGGATGTTCGCGAGATGTCCAAAAAGCGGCACAAGGCGGCACCG TCGCTGACCAGCATGCCGGTGCCGCCCGGCGAGACCCTCAACACAGACGACATCTGCTTC TCCTTGCAGGAGACGATCTTCGCCATGCTAGTCGAAGTGACGGAGCGCGCCATGTCGCAA ATCAAAACATCTGACGTGCTCATTGTTGGGGGGGTGGGCTGCAACAGGCGCCTGCAGGAG ATGATGCAGCTGATGGCGGCAGAGCGTGGGGGTCGCTGCTTCGGCATGGATCAGCGATAC TGCATCGACAATGGCTGCATGATTGCGTATGCCGGGCTGCTCCAGTACCTCAGTGGGTCC TTCACGACCATGGCGGAGGCGACTGTCACGCAGCGCTTTCGCACCGATGAAGTTTACGTG ACGTGGCGCGATTGA
  • Download Fasta

  • Fasta :-

    MKRTLSLGIEGSANKIGVGVVDQSGTVLSNVRETYITPPGSGFLPRETAIHHSQHVLQVV QRAMHDAAVTPADIDIISYTKGPGMGGPLSVGCTVAKTLSLLWGKPLVGVNHCVGHIEMG RVVTKSENPVVLYVSGGNTQVIAYADHRYRIFGETIDIAVGNCLDRVARLLNISNDPAPG YNIEQKAKKGKCYIRLPYTVKGMDMSFTGILSYIEQLVHHPQFSDSDVREMSKKRHKAAP SLTSMPVPPGETLNTDDICFSLQETIFAMLVEVTERAMSQIKTSDVLIVGGVGCNRRLQE MMQLMAAERGGRCFGMDQRYCIDNGCMIAYAGLLQYLSGSFTTMAEATVTQRFRTDEVYV TWRD

  • title: nucleotide binding site
  • coordinates: E10,G11,S12,A13,K15,G17,H112,Y133,V134,S135,G136
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.31.0100232 SVREMSKKRH0.998unspLmjF.31.0100279 SERAMSQIKT0.997unsp

LmjF.31.0100      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India