LmjF.31.0140 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.31.0140OTHER0.9999550.0000240.000021
No Results

  • Fasta :-

    >LmjF.31.0140 MAKIKVKWGKENLTMEVDLGSTVGAFKEALKAETGVPVEKQKLMGLKPSMNKDDATLSAA GLVTGKTVMLIGSAESTATVPTVQAAVVEANETGGYTATAPTSNGLKNIANTCYLNSALQ MMRSIPEIREVLDVYRGDNALLQQLGAVLQLLESTKDAVMPLQFWTTLVQTNPTFGERNE HGGFIQQDSQEVLNMLLQAVNAVLPEKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML SCNITGEVQTLEAGLEHAFDEHFTAPCEALQKDAARFTRVSRLTEAPEYVFVHMVRFSWR GDIQKKAKILKPITFPFILDTTIISTEALKAAQKPVREDIRERRDTELARRCRPRAEEKP SPVDKPEEEKVPLILRNESGYYDLCGVISHKGRSADGGHYVYWGKKADTWLVYDDEHVAA VSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/4 Sequence name : 4 Sequence length : 457 VALUES OF COMPUTED PARAMETERS Coef20 : 3.437 CoefTot : -0.561 ChDiff : -8 ZoneTo : 10 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.412 0.128 0.536 MesoH : 0.057 0.316 -0.230 0.228 MuHd_075 : 13.601 4.025 4.488 2.061 MuHd_095 : 23.228 13.964 6.435 4.722 MuHd_100 : 17.051 9.688 4.676 3.237 MuHd_105 : 7.612 5.284 2.165 1.299 Hmax_075 : 0.933 3.800 -1.758 3.313 Hmax_095 : -2.625 7.087 -2.459 2.450 Hmax_100 : -6.400 6.200 -2.946 2.160 Hmax_105 : -2.300 2.800 -3.102 2.077 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9818 0.0182 DFMC : 0.9765 0.0235
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 457 LmjF.31.0140 MAKIKVKWGKENLTMEVDLGSTVGAFKEALKAETGVPVEKQKLMGLKPSMNKDDATLSAAGLVTGKTVMLIGSAESTATV 80 PTVQAAVVEANETGGYTATAPTSNGLKNIANTCYLNSALQMMRSIPEIREVLDVYRGDNALLQQLGAVLQLLESTKDAVM 160 PLQFWTTLVQTNPTFGERNEHGGFIQQDSQEVLNMLLQAVNAVLPEKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML 240 SCNITGEVQTLEAGLEHAFDEHFTAPCEALQKDAARFTRVSRLTEAPEYVFVHMVRFSWRGDIQKKAKILKPITFPFILD 320 TTIISTEALKAAQKPVREDIRERRDTELARRCRPRAEEKPSPVDKPEEEKVPLILRNESGYYDLCGVISHKGRSADGGHY 400 VYWGKKADTWLVYDDEHVAAVSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................P........................................................ 400 ......................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.31.0140 3 ----MAK|IK 0.065 . LmjF.31.0140 5 --MAKIK|VK 0.072 . LmjF.31.0140 7 MAKIKVK|WG 0.075 . LmjF.31.0140 10 IKVKWGK|EN 0.079 . LmjF.31.0140 27 STVGAFK|EA 0.073 . LmjF.31.0140 31 AFKEALK|AE 0.058 . LmjF.31.0140 40 TGVPVEK|QK 0.067 . LmjF.31.0140 42 VPVEKQK|LM 0.071 . LmjF.31.0140 47 QKLMGLK|PS 0.065 . LmjF.31.0140 52 LKPSMNK|DD 0.059 . LmjF.31.0140 66 AGLVTGK|TV 0.070 . LmjF.31.0140 107 PTSNGLK|NI 0.056 . LmjF.31.0140 123 SALQMMR|SI 0.126 . LmjF.31.0140 129 RSIPEIR|EV 0.134 . LmjF.31.0140 136 EVLDVYR|GD 0.092 . LmjF.31.0140 156 QLLESTK|DA 0.068 . LmjF.31.0140 178 NPTFGER|NE 0.095 . LmjF.31.0140 207 NAVLPEK|YA 0.070 . LmjF.31.0140 215 AHLFEGK|LH 0.056 . LmjF.31.0140 229 VDDPADK|GK 0.059 . LmjF.31.0140 231 DPADKGK|ES 0.084 . LmjF.31.0140 272 PCEALQK|DA 0.068 . LmjF.31.0140 276 LQKDAAR|FT 0.139 . LmjF.31.0140 279 DAARFTR|VS 0.235 . LmjF.31.0140 282 RFTRVSR|LT 0.254 . LmjF.31.0140 296 VFVHMVR|FS 0.104 . LmjF.31.0140 300 MVRFSWR|GD 0.124 . LmjF.31.0140 305 WRGDIQK|KA 0.074 . LmjF.31.0140 306 RGDIQKK|AK 0.099 . LmjF.31.0140 308 DIQKKAK|IL 0.082 . LmjF.31.0140 311 KKAKILK|PI 0.065 . LmjF.31.0140 330 ISTEALK|AA 0.060 . LmjF.31.0140 334 ALKAAQK|PV 0.069 . LmjF.31.0140 337 AAQKPVR|ED 0.099 . LmjF.31.0140 341 PVREDIR|ER 0.086 . LmjF.31.0140 343 REDIRER|RD 0.068 . LmjF.31.0140 344 EDIRERR|DT 0.619 *ProP* LmjF.31.0140 350 RDTELAR|RC 0.075 . LmjF.31.0140 351 DTELARR|CR 0.092 . LmjF.31.0140 353 ELARRCR|PR 0.199 . LmjF.31.0140 355 ARRCRPR|AE 0.130 . LmjF.31.0140 359 RPRAEEK|PS 0.065 . LmjF.31.0140 365 KPSPVDK|PE 0.090 . LmjF.31.0140 370 DKPEEEK|VP 0.053 . LmjF.31.0140 376 KVPLILR|NE 0.070 . LmjF.31.0140 391 CGVISHK|GR 0.070 . LmjF.31.0140 393 VISHKGR|SA 0.430 . LmjF.31.0140 405 HYVYWGK|KA 0.071 . LmjF.31.0140 406 YVYWGKK|AD 0.079 . LmjF.31.0140 427 VSEEDVK|RL 0.063 . LmjF.31.0140 428 SEEDVKR|LR 0.250 . LmjF.31.0140 430 EDVKRLR|GV 0.148 . LmjF.31.0140 444 AYVLLYR|SR 0.131 . LmjF.31.0140 446 VLLYRSR|DP 0.080 . LmjF.31.0140 451 SRDPVTR|TP 0.086 . ____________________________^_________________

  • Fasta :-

    >LmjF.31.0140 ATGGCCAAAATCAAAGTCAAGTGGGGTAAGGAGAACCTCACGATGGAGGTGGACCTGGGC AGTACGGTGGGTGCCTTCAAGGAGGCGCTCAAAGCCGAGACCGGGGTGCCAGTGGAGAAG CAGAAGCTCATGGGCCTAAAGCCCTCCATGAACAAGGATGACGCCACGCTCAGCGCCGCC GGCCTCGTGACTGGCAAGACGGTCATGCTGATTGGGTCAGCGGAGAGCACTGCAACGGTG CCCACAGTGCAAGCGGCTGTTGTAGAAGCGAATGAGACAGGTGGCTACACCGCGACTGCG CCAACCTCAAATGGCTTGAAGAATATCGCCAACACGTGCTACCTGAACTCGGCTCTGCAG ATGATGCGGAGTATTCCGGAGATTCGGGAAGTGCTCGACGTGTACCGCGGCGACAACGCA CTTCTGCAGCAGCTCGGTGCTGTGCTACAGTTGCTGGAGAGCACCAAGGATGCGGTGATG CCGCTGCAGTTCTGGACGACGCTCGTGCAGACAAACCCAACGTTTGGCGAGCGCAACGAG CACGGTGGCTTCATACAGCAGGACTCGCAGGAGGTGCTGAACATGCTGCTCCAGGCCGTA AACGCCGTGCTGCCCGAGAAGTACGCGCACCTCTTTGAAGGCAAGCTGCACCAGACCCTC ACCTGCGTCGACGACCCCGCTGACAAGGGCAAGGAGTCCGACGTGCCCTTCACGATGCTC TCCTGCAACATCACCGGCGAGGTGCAAACGCTTGAGGCGGGGCTCGAGCACGCCTTCGAC GAGCACTTCACCGCACCTTGCGAGGCCCTGCAGAAAGACGCCGCCCGGTTCACTCGCGTT AGCAGACTGACCGAAGCACCGGAGTATGTCTTTGTGCACATGGTGCGCTTCTCCTGGCGC GGCGACATTCAGAAGAAGGCGAAGATCCTCAAGCCTATCACGTTCCCCTTCATCCTCGAC ACCACCATCATCTCCACCGAAGCGCTCAAGGCGGCACAGAAGCCGGTGCGCGAGGATATC CGCGAGCGGCGCGACACGGAGCTGGCGCGGCGTTGCCGCCCCCGCGCAGAGGAGAAGCCG TCGCCAGTGGACAAACCGGAGGAGGAGAAGGTTCCCCTGATCCTCAGGAATGAGAGCGGC TACTATGACCTGTGCGGCGTCATCTCGCACAAGGGCCGCAGCGCGGACGGCGGCCACTAC GTCTACTGGGGTAAGAAAGCAGACACGTGGCTCGTCTACGACGACGAGCACGTGGCGGCC GTCTCGGAGGAGGACGTGAAGCGGCTGCGTGGTGTCGGAGAAGCTCACATCGCCTACGTC CTGCTGTATCGCAGTCGCGACCCCGTCACACGAACTCCGGTTATTCCACTTTAG
  • Download Fasta

  • Fasta :-

    MAKIKVKWGKENLTMEVDLGSTVGAFKEALKAETGVPVEKQKLMGLKPSMNKDDATLSAA GLVTGKTVMLIGSAESTATVPTVQAAVVEANETGGYTATAPTSNGLKNIANTCYLNSALQ MMRSIPEIREVLDVYRGDNALLQQLGAVLQLLESTKDAVMPLQFWTTLVQTNPTFGERNE HGGFIQQDSQEVLNMLLQAVNAVLPEKYAHLFEGKLHQTLTCVDDPADKGKESDVPFTML SCNITGEVQTLEAGLEHAFDEHFTAPCEALQKDAARFTRVSRLTEAPEYVFVHMVRFSWR GDIQKKAKILKPITFPFILDTTIISTEALKAAQKPVREDIRERRDTELARRCRPRAEEKP SPVDKPEEEKVPLILRNESGYYDLCGVISHKGRSADGGHYVYWGKKADTWLVYDDEHVAA VSEEDVKRLRGVGEAHIAYVLLYRSRDPVTRTPVIPL

    No Results
  • title: Active Site
  • coordinates: N108,C113,H399,D415
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.31.0140422 SVAAVSEEDV0.993unspLmjF.31.0140422 SVAAVSEEDV0.993unspLmjF.31.0140422 SVAAVSEEDV0.993unspLmjF.31.0140154 SQLLESTKDA0.997unspLmjF.31.0140361 SEEKPSPVDK0.997unsp

LmjF.31.0140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India