LmjF.32.3680 | 3-hydroxyisobutyryl-coenzyme A hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.32.3680OTHER0.8737200.0009720.125308
No Results

  • Fasta :-

    >LmjF.32.3680 MHRTGARCSASVLYKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPPSLYILT GAGTKAFCAGGDVIGLTTNNPPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMGLTGHRLRGADLV HLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSISSLASHF DITADLTISSILDACREHAQTDPLAKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAF QMEYCVSQRIIAEHDFREGVRALLIDKDKKPKWQPSTVAEVSAEAIDAYFRPTTPDQPVW DPVAPLSERAS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/391 Sequence name : 391 Sequence length : 371 VALUES OF COMPUTED PARAMETERS Coef20 : 3.813 CoefTot : -0.612 ChDiff : -8 ZoneTo : 34 KR : 5 DE : 1 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.335 1.182 0.204 0.600 MesoH : 0.395 0.724 -0.067 0.400 MuHd_075 : 33.886 13.612 7.449 6.853 MuHd_095 : 32.150 18.587 9.028 8.058 MuHd_100 : 23.435 19.660 6.975 6.664 MuHd_105 : 20.193 17.238 8.208 6.556 Hmax_075 : 6.600 5.133 1.095 3.870 Hmax_095 : 8.500 6.700 1.079 3.520 Hmax_100 : 3.100 11.800 0.077 3.760 Hmax_105 : 0.087 7.525 -1.476 2.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2175 0.7825 DFMC : 0.2497 0.7503 This protein is probably imported in mitochondria. f(Ser) = 0.0882 f(Arg) = 0.1176 CMi = 0.37594 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 371 LmjF.32.3680 MHRTGARCSASVLYKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPPSLYILTGAGTKAFCAGGDVIGLTTNN 80 PPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAGLSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSV 160 PGLGLYMGLTGHRLRGADLVHLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSISSLASHF 240 DITADLTISSILDACREHAQTDPLAKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAFQMEYCVSQRIIAEHDFREGV 320 RALLIDKDKKPKWQPSTVAEVSAEAIDAYFRPTTPDQPVWDPVAPLSERAS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.3680 3 ----MHR|TG 0.074 . LmjF.32.3680 7 MHRTGAR|CS 0.092 . LmjF.32.3680 15 SASVLYK|DY 0.102 . LmjF.32.3680 21 KDYPHAR|HI 0.127 . LmjF.32.3680 27 RHITLNR|PN 0.084 . LmjF.32.3680 40 LDYGMTR|EL 0.088 . LmjF.32.3680 44 MTRELHR|LY 0.079 . LmjF.32.3680 65 LTGAGTK|AF 0.068 . LmjF.32.3680 86 NPPGCGR|EF 0.093 . LmjF.32.3680 98 EYQVDYK|AS 0.061 . LmjF.32.3680 128 SIGSAYR|VA 0.096 . LmjF.32.3680 133 YRVASEK|AC 0.073 . LmjF.32.3680 157 ASWFLPR|LS 0.102 . LmjF.32.3680 173 MGLTGHR|LR 0.079 . LmjF.32.3680 175 LTGHRLR|GA 0.117 . LmjF.32.3680 193 HFVPSAK|MG 0.068 . LmjF.32.3680 216 VEAVLDK|YT 0.067 . LmjF.32.3680 256 SILDACR|EH 0.073 . LmjF.32.3680 266 QTDPLAK|AA 0.081 . LmjF.32.3680 288 LALELLK|RG 0.050 . LmjF.32.3680 289 ALELLKR|GA 0.187 . LmjF.32.3680 292 LLKRGAK|LS 0.135 . LmjF.32.3680 309 EYCVSQR|II 0.087 . LmjF.32.3680 317 IAEHDFR|EG 0.076 . LmjF.32.3680 321 DFREGVR|AL 0.073 . LmjF.32.3680 327 RALLIDK|DK 0.059 . LmjF.32.3680 329 LLIDKDK|KP 0.065 . LmjF.32.3680 330 LIDKDKK|PK 0.080 . LmjF.32.3680 332 DKDKKPK|WQ 0.062 . LmjF.32.3680 351 AIDAYFR|PT 0.083 . LmjF.32.3680 369 VAPLSER|AS 0.081 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.3680 ATGCATCGGACCGGCGCGCGTTGTAGCGCGAGCGTGCTCTACAAAGACTACCCGCATGCG CGCCACATCACCCTCAACCGACCCAATTCACTGAACGCGCTGGATTATGGCATGACACGA GAGCTGCACCGTCTGTACGTGACAGAGCCAGCTCCTCCGCCATCCCTGTATATTCTCACC GGGGCAGGCACAAAGGCGTTCTGCGCCGGCGGCGATGTGATCGGCCTCACGACGAACAAC CCGCCCGGATGCGGTCGTGAATTCTTCTACTGGGAGTACCAAGTCGACTACAAGGCGAGC ATCATTCCTGCTGGGCAGGTGTGCTTGTGGGACGGCTACGTGCTCGGCGGCGGCGCTGGC TTATCGATTGGAAGCGCTTATCGGGTGGCGTCGGAGAAGGCATGCTTTGCAATGCCGGAG GTGGCCATAGGCATGTTCCCCGACGTAGGGGCTTCGTGGTTCCTGCCGCGGCTGTCGGTG CCTGGACTGGGGCTCTACATGGGGCTCACCGGCCACCGGCTCCGCGGGGCAGACCTTGTG CACCTTGGACTTGCAACACACTTTGTGCCATCTGCCAAGATGGGCGAGCTGGAGCAGGCT CTTGTCTCGATGTCGGATGCAGGTGATGTGGAGGCGGTGCTGGACAAGTACACGACGCCG ACAACGCAGCTGCCACCATGCACCATCGCCCATTCCATTTCTTCTCTCGCCAGTCATTTT GACATCACGGCAGATCTAACCATATCGTCCATCTTGGACGCGTGCAGGGAGCATGCGCAG ACGGATCCGCTGGCCAAGGCAGCGGCGGACCTCATGCCTTCCTTCTCTCCGACGGCAATG ACGCTCGCACTGGAGCTGCTGAAGCGCGGCGCGAAGCTGAGCACACCAGTGGAGGCGTTC CAGATGGAGTACTGCGTTTCCCAGCGCATCATCGCGGAACACGACTTTCGCGAAGGTGTC CGAGCCCTGCTCATTGATAAAGACAAGAAGCCGAAATGGCAACCGTCAACTGTTGCCGAG GTTTCGGCGGAGGCCATCGATGCATACTTCCGCCCCACCACACCGGACCAGCCGGTCTGG GATCCAGTGGCGCCGCTCTCAGAGCGCGCATCGTGA
  • Download Fasta

  • Fasta :-

    MHRTGARCSASVLYKDYPHARHITLNRPNSLNALDYGMTRELHRLYVTEPAPPPSLYILT GAGTKAFCAGGDVIGLTTNNPPGCGREFFYWEYQVDYKASIIPAGQVCLWDGYVLGGGAG LSIGSAYRVASEKACFAMPEVAIGMFPDVGASWFLPRLSVPGLGLYMGLTGHRLRGADLV HLGLATHFVPSAKMGELEQALVSMSDAGDVEAVLDKYTTPTTQLPPCTIAHSISSLASHF DITADLTISSILDACREHAQTDPLAKAAADLMPSFSPTAMTLALELLKRGAKLSTPVEAF QMEYCVSQRIIAEHDFREGVRALLIDKDKKPKWQPSTVAEVSAEAIDAYFRPTTPDQPVW DPVAPLSERAS

  • title: substrate binding site
  • coordinates: L31,A33,K65,A69,G70,G71,D72,V73,Y113,L115,G116,G117,P139,E140,I143
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.3680203 SQALVSMSDA0.991unspLmjF.32.3680203 SQALVSMSDA0.991unspLmjF.32.3680203 SQALVSMSDA0.991unspLmjF.32.3680131 SYRVASEKAC0.991unspLmjF.32.3680191 SHFVPSAKMG0.992unsp

LmjF.32.3680      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India