LmjF.33.1800 | Der1-like family, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmjF.33.1800OTHER0.9983390.0014820.000179
No Results

  • Fasta :-

    >LmjF.33.1800 MNNVIENALRETPITLVLCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRIFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRVFERAFAVPVRQAT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/35 Sequence name : 35 Sequence length : 215 VALUES OF COMPUTED PARAMETERS Coef20 : 3.972 CoefTot : -0.268 ChDiff : 1 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.182 2.294 0.428 0.796 MesoH : 0.923 1.445 0.085 0.514 MuHd_075 : 26.975 21.503 9.025 5.725 MuHd_095 : 36.498 20.296 9.522 6.486 MuHd_100 : 32.439 15.523 7.930 5.387 MuHd_105 : 27.822 15.634 6.689 5.216 Hmax_075 : 16.567 22.400 4.034 7.257 Hmax_095 : 17.500 19.300 3.258 5.910 Hmax_100 : 16.100 14.800 2.552 4.760 Hmax_105 : 8.500 11.600 0.330 3.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5917 0.4083 DFMC : 0.6583 0.3417
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 215 LmjF.33.1800 MNNVIENALRETPITLVLCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFLYFGPISAHCIMEIQWIYLVS 80 SYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYLSYMLGTCLTYIMSRIFNDMEVAIFFVVPVPMRLLPFVLLI 160 MNTMVSGMTNEVLGNVLGHILWYFLEVFPRITGQSPLRIQRVFERAFAVPVRQAT 240 ................................................................................ 80 ................................................................................ 160 ....................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.33.1800 10 VIENALR|ET 0.074 . LmjF.33.1800 48 SPSLVFK|EH 0.072 . LmjF.33.1800 54 KEHQYWR|LV 0.121 . LmjF.33.1800 90 EAQYYHR|RP 0.074 . LmjF.33.1800 91 AQYYHRR|PL 0.155 . LmjF.33.1800 110 CSLLGLR|FS 0.076 . LmjF.33.1800 134 LTYIMSR|IF 0.097 . LmjF.33.1800 152 VVPVPMR|LL 0.076 . LmjF.33.1800 190 FLEVFPR|IT 0.133 . LmjF.33.1800 198 TGQSPLR|IQ 0.092 . LmjF.33.1800 201 SPLRIQR|VF 0.250 . LmjF.33.1800 205 IQRVFER|AF 0.098 . LmjF.33.1800 212 AFAVPVR|QA 0.119 . ____________________________^_________________

  • Fasta :-

    >LmjF.33.1800 ATGAACAACGTTATTGAAAATGCCCTGCGGGAGACACCCATCACACTTGTGCTCTGCGGG CTGATGGGGATGCTAGGCGTTATGTCGTCGTTGGAGGTGATTCATCCTCTCTACTTACTG CTAAGTCCGTCGTTAGTGTTCAAAGAGCATCAGTACTGGCGCCTGGTCACCAACTTCCTC TACTTTGGTCCAATCAGCGCTCACTGCATCATGGAAATTCAGTGGATCTACCTCGTGAGC TCTTACTTGGAAGCGCAGTATTACCACAGGCGACCGCTTGACTACATCTTCCTACTCTTG ATCATCGGCTGCTCGCTTTTGGGCCTGCGGTTTTCGTCGATTGTGAATGTGCCATACCTA AGCTACATGCTAGGCACGTGCCTGACATACATTATGAGTCGTATCTTCAACGACATGGAA GTTGCCATCTTTTTTGTGGTTCCGGTTCCAATGCGCCTTCTCCCGTTTGTGCTTCTGATC ATGAACACAATGGTATCTGGAATGACGAACGAGGTCCTGGGCAATGTTCTCGGGCACATC TTATGGTATTTTTTAGAGGTGTTTCCTCGCATCACCGGGCAGAGCCCTCTTCGAATCCAG CGTGTATTCGAGCGGGCATTTGCTGTACCGGTACGCCAGGCGACGTAG
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  • Fasta :-

    MNNVIENALRETPITLVLCGLMGMLGVMSSLEVIHPLYLLLSPSLVFKEHQYWRLVTNFL YFGPISAHCIMEIQWIYLVSSYLEAQYYHRRPLDYIFLLLIIGCSLLGLRFSSIVNVPYL SYMLGTCLTYIMSRIFNDMEVAIFFVVPVPMRLLPFVLLIMNTMVSGMTNEVLGNVLGHI LWYFLEVFPRITGQSPLRIQRVFERAFAVPVRQAT

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LmjF.33.1800      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India