LmjF.33.2610 | Mitochondrial-processing peptidase subunit alpha

_IDPredictionOTHERSPmTPCS_Position
LmjF.33.2610mTP0.4597910.0006110.539598CS pos: 7-8. SRL-AR. Pr: 0.1724
No Results

  • Fasta :-

    >LmjF.33.2610 MLAASRLARGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFG AAAVMESLPLRSNTRMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHRKEGLDVLN GMWLHPTDNDEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVADHKTFVQEAEVRLQFPQATAPSLHSSSAETA NKAAAATAQLHPYTGGCEYVQNTMAPESMNKFQEKNLSHIALFFQAIPMAHPDYFTFSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNVHGMECITAWYSDGGLIGLYGSAPHEH VNNLLKIIIFQAASISQRVTPVHVEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMARLHEVCAQLIEHPITFAVYGETKGMPEYRELVQALKKSYASLSKS TPA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/234 Sequence name : 234 Sequence length : 483 VALUES OF COMPUTED PARAMETERS Coef20 : 4.725 CoefTot : 0.940 ChDiff : -4 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.088 0.134 0.508 MesoH : -0.091 0.278 -0.323 0.254 MuHd_075 : 22.694 15.119 5.886 3.590 MuHd_095 : 45.080 25.895 10.925 9.993 MuHd_100 : 41.165 23.251 9.227 9.227 MuHd_105 : 32.440 19.281 6.866 7.517 Hmax_075 : 0.300 10.200 -0.331 1.990 Hmax_095 : 14.600 19.400 3.133 5.780 Hmax_100 : 14.000 14.900 2.260 4.520 Hmax_105 : 6.650 11.813 0.184 3.841 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0828 0.9172 DFMC : 0.0863 0.9137 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.1667 CMi = 0.27473 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 483 LmjF.33.2610 MLAASRLARGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFGAAAVMESLPLRSNTRMTTET 80 ISQSLGVFGNAYKVTNNREAMSVMLMMPRYHRKEGLDVLNGMWLHPTDNDEEFAVAKAQTLHRSSLMSRDATSMLFELVH 160 KAGWSGRGLGNPLSPTEQQLEQLTLERFHAFHRRYTTPERTVLAATGVADHKTFVQEAEVRLQFPQATAPSLHSSSAETA 240 NKAAAATAQLHPYTGGCEYVQNTMAPESMNKFQEKNLSHIALFFQAIPMAHPDYFTFSVIQTLLGGGTSFSSGGPGKGMQ 320 TKLFREVLNREPNVHGMECITAWYSDGGLIGLYGSAPHEHVNNLLKIIIFQAASISQRVTPVHVEMAKNQLSSQLILLGE 400 GREQLLNDMGFNLLVHNYTITPQETIQGSAQVTMARLHEVCAQLIEHPITFAVYGETKGMPEYRELVQALKKSYASLSKS 480 TPA 560 ........P....................................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.33.2610 6 -MLAASR|LA 0.084 . LmjF.33.2610 9 AASRLAR|GV 0.555 *ProP* LmjF.33.2610 17 VAETVTR|EN 0.085 . LmjF.33.2610 24 ENFTISR|LT 0.077 . LmjF.33.2610 30 RLTNGLR|VI 0.075 . LmjF.33.2610 52 FSLNGPK|FE 0.065 . LmjF.33.2610 71 MESLPLR|SN 0.146 . LmjF.33.2610 75 PLRSNTR|MT 0.102 . LmjF.33.2610 93 VFGNAYK|VT 0.062 . LmjF.33.2610 98 YKVTNNR|EA 0.106 . LmjF.33.2610 109 VMLMMPR|YH 0.090 . LmjF.33.2610 112 MMPRYHR|KE 0.143 . LmjF.33.2610 113 MPRYHRK|EG 0.133 . LmjF.33.2610 137 EEFAVAK|AQ 0.066 . LmjF.33.2610 143 KAQTLHR|SS 0.133 . LmjF.33.2610 149 RSSLMSR|DA 0.186 . LmjF.33.2610 161 LFELVHK|AG 0.062 . LmjF.33.2610 167 KAGWSGR|GL 0.143 . LmjF.33.2610 187 EQLTLER|FH 0.071 . LmjF.33.2610 193 RFHAFHR|RY 0.100 . LmjF.33.2610 194 FHAFHRR|YT 0.272 . LmjF.33.2610 200 RYTTPER|TV 0.097 . LmjF.33.2610 212 TGVADHK|TF 0.060 . LmjF.33.2610 221 VQEAEVR|LQ 0.080 . LmjF.33.2610 242 SAETANK|AA 0.065 . LmjF.33.2610 271 APESMNK|FQ 0.077 . LmjF.33.2610 275 MNKFQEK|NL 0.092 . LmjF.33.2610 317 SSGGPGK|GM 0.081 . LmjF.33.2610 322 GKGMQTK|LF 0.080 . LmjF.33.2610 325 MQTKLFR|EV 0.120 . LmjF.33.2610 330 FREVLNR|EP 0.088 . LmjF.33.2610 366 HVNNLLK|II 0.067 . LmjF.33.2610 378 AASISQR|VT 0.104 . LmjF.33.2610 388 VHVEMAK|NQ 0.058 . LmjF.33.2610 402 ILLGEGR|EQ 0.068 . LmjF.33.2610 436 AQVTMAR|LH 0.080 . LmjF.33.2610 458 AVYGETK|GM 0.061 . LmjF.33.2610 464 KGMPEYR|EL 0.124 . LmjF.33.2610 471 ELVQALK|KS 0.060 . LmjF.33.2610 472 LVQALKK|SY 0.102 . LmjF.33.2610 479 SYASLSK|ST 0.083 . ____________________________^_________________

  • Fasta :-

    >LmjF.33.2610 ATGCTTGCTGCGAGTCGTCTTGCCCGCGGCGTTGCCGAGACAGTCACGCGCGAGAACTTC ACCATATCCCGTCTTACGAACGGCCTGCGCGTCATCACATGCGAGGACGGCAATGGCATC ACCGGCATGGGGCTTTTCTCCTTGAACGGCCCCAAGTTCGAGGAGGAGGGGAGCTTTGGC GCTGCTGCGGTGATGGAGTCGCTTCCGCTGCGCAGCAACACGCGCATGACGACCGAGACG ATTAGCCAGTCACTCGGTGTGTTTGGCAACGCGTACAAGGTGACCAACAACCGTGAGGCC ATGTCCGTCATGCTCATGATGCCGCGCTACCACCGGAAGGAAGGACTCGATGTACTGAAC GGGATGTGGCTGCACCCAACCGACAACGACGAGGAGTTCGCCGTGGCGAAGGCTCAGACC CTGCACCGCAGCTCTCTCATGAGCCGAGACGCAACGAGCATGCTGTTCGAGCTTGTCCAC AAGGCCGGCTGGAGCGGTCGTGGGCTCGGCAACCCGCTTTCTCCGACAGAGCAGCAGCTG GAGCAGCTGACACTGGAGAGGTTCCACGCCTTCCACCGCCGCTACACCACGCCGGAGCGG ACGGTGCTGGCGGCGACGGGTGTGGCGGATCACAAGACGTTTGTACAGGAAGCGGAGGTG CGGCTGCAGTTTCCTCAAGCGACCGCGCCATCTCTCCATTCGTCTAGCGCAGAGACGGCG AACAAGGCAGCTGCTGCAACAGCTCAGCTTCACCCGTACACGGGCGGCTGCGAGTACGTG CAGAACACAATGGCGCCGGAGTCCATGAACAAGTTTCAGGAAAAGAACCTTAGCCACATA GCCCTCTTCTTCCAGGCCATCCCAATGGCCCACCCCGACTACTTCACCTTCTCGGTCATT CAAACACTGCTGGGTGGCGGCACCTCGTTCAGCTCCGGCGGCCCTGGCAAGGGCATGCAG ACCAAGCTGTTTCGTGAGGTGCTGAACCGGGAGCCGAACGTGCACGGCATGGAGTGCATT ACGGCGTGGTACAGCGATGGTGGCTTGATCGGCCTCTACGGCTCTGCGCCGCACGAGCAC GTGAACAACCTCTTAAAGATCATAATTTTCCAGGCGGCGTCGATTAGCCAGCGCGTCACC CCGGTGCACGTAGAGATGGCCAAAAACCAACTAAGCTCGCAGCTCATCCTATTGGGCGAG GGGCGTGAACAGCTGCTGAACGACATGGGTTTCAACCTCCTCGTGCACAACTACACGATT ACGCCGCAGGAGACTATTCAGGGCAGCGCGCAGGTGACAATGGCGCGTCTCCACGAGGTG TGTGCGCAGCTGATTGAGCACCCGATCACGTTTGCCGTGTACGGGGAGACGAAGGGGATG CCGGAGTACCGTGAGCTAGTCCAGGCTCTGAAGAAGTCGTATGCGTCCCTGAGCAAGAGC ACACCGGCGTGA
  • Download Fasta

  • Fasta :-

    MLAASRLARGVAETVTRENFTISRLTNGLRVITCEDGNGITGMGLFSLNGPKFEEEGSFG AAAVMESLPLRSNTRMTTETISQSLGVFGNAYKVTNNREAMSVMLMMPRYHRKEGLDVLN GMWLHPTDNDEEFAVAKAQTLHRSSLMSRDATSMLFELVHKAGWSGRGLGNPLSPTEQQL EQLTLERFHAFHRRYTTPERTVLAATGVADHKTFVQEAEVRLQFPQATAPSLHSSSAETA NKAAAATAQLHPYTGGCEYVQNTMAPESMNKFQEKNLSHIALFFQAIPMAHPDYFTFSVI QTLLGGGTSFSSGGPGKGMQTKLFREVLNREPNVHGMECITAWYSDGGLIGLYGSAPHEH VNNLLKIIIFQAASISQRVTPVHVEMAKNQLSSQLILLGEGREQLLNDMGFNLLVHNYTI TPQETIQGSAQVTMARLHEVCAQLIEHPITFAVYGETKGMPEYRELVQALKKSYASLSKS TPA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.33.2610197 TRRYTTPERT0.994unsp

LmjF.33.2610      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India