LmjF.33.3130 | Trypsin-like peptidase domain containing protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.33.3130OTHER0.9244830.0465420.028975
No Results

  • Fasta :-

    >LmjF.33.3130 MAEGAAAAAGASALAAASQRRGCCFPILSFLHVPGKMTKPLWLMMGTAFTFRTREMVEAA CGQPAAPPSLLLTAKHSFSPWDYTKDASQLKIPKEYQKPRFVIGRVYRTDADGRAVAADA VGLRLLAQHPVHDVALLAVDAASLKLLQCATDDSPAYALDLAHEALPLCKEPYPAASDGL LIGFRGVGRLGELDTLDPSVLQRLPPHEREALLKDLQDVEGKQRRATTTVSVLDARGMCK GVGDLATCYHGMSGGPLVTTTGQCAGVMYGHHPDAPGCIGYTPCVDFAGWLEEEVQRYTK RCDSH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/69 Sequence name : 69 Sequence length : 305 VALUES OF COMPUTED PARAMETERS Coef20 : 4.455 CoefTot : 0.316 ChDiff : -2 ZoneTo : 54 KR : 6 DE : 1 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.600 0.166 0.506 MesoH : 0.106 0.505 -0.171 0.259 MuHd_075 : 23.987 15.452 8.288 5.164 MuHd_095 : 29.360 18.550 8.680 6.063 MuHd_100 : 28.106 17.797 9.666 5.572 MuHd_105 : 29.686 22.425 10.677 6.602 Hmax_075 : 15.633 16.450 5.802 4.810 Hmax_095 : 12.800 14.613 5.906 4.710 Hmax_100 : 19.100 14.900 5.099 6.200 Hmax_105 : 18.800 17.700 4.135 6.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6296 0.3704 DFMC : 0.3400 0.6600 This protein is probably imported in mitochondria. f(Ser) = 0.0556 f(Arg) = 0.0741 CMi = 0.31983 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 305 LmjF.33.3130 MAEGAAAAAGASALAAASQRRGCCFPILSFLHVPGKMTKPLWLMMGTAFTFRTREMVEAACGQPAAPPSLLLTAKHSFSP 80 WDYTKDASQLKIPKEYQKPRFVIGRVYRTDADGRAVAADAVGLRLLAQHPVHDVALLAVDAASLKLLQCATDDSPAYALD 160 LAHEALPLCKEPYPAASDGLLIGFRGVGRLGELDTLDPSVLQRLPPHEREALLKDLQDVEGKQRRATTTVSVLDARGMCK 240 GVGDLATCYHGMSGGPLVTTTGQCAGVMYGHHPDAPGCIGYTPCVDFAGWLEEEVQRYTKRCDSH 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.33.3130 20 LAAASQR|RG 0.074 . LmjF.33.3130 21 AAASQRR|GC 0.155 . LmjF.33.3130 36 FLHVPGK|MT 0.072 . LmjF.33.3130 39 VPGKMTK|PL 0.070 . LmjF.33.3130 52 GTAFTFR|TR 0.111 . LmjF.33.3130 54 AFTFRTR|EM 0.073 . LmjF.33.3130 75 SLLLTAK|HS 0.063 . LmjF.33.3130 85 SPWDYTK|DA 0.091 . LmjF.33.3130 91 KDASQLK|IP 0.059 . LmjF.33.3130 94 SQLKIPK|EY 0.061 . LmjF.33.3130 98 IPKEYQK|PR 0.069 . LmjF.33.3130 100 KEYQKPR|FV 0.174 . LmjF.33.3130 105 PRFVIGR|VY 0.097 . LmjF.33.3130 108 VIGRVYR|TD 0.315 . LmjF.33.3130 114 RTDADGR|AV 0.101 . LmjF.33.3130 124 ADAVGLR|LL 0.083 . LmjF.33.3130 145 VDAASLK|LL 0.062 . LmjF.33.3130 170 EALPLCK|EP 0.058 . LmjF.33.3130 185 GLLIGFR|GV 0.124 . LmjF.33.3130 189 GFRGVGR|LG 0.075 . LmjF.33.3130 203 DPSVLQR|LP 0.095 . LmjF.33.3130 209 RLPPHER|EA 0.078 . LmjF.33.3130 214 EREALLK|DL 0.099 . LmjF.33.3130 222 LQDVEGK|QR 0.060 . LmjF.33.3130 224 DVEGKQR|RA 0.086 . LmjF.33.3130 225 VEGKQRR|AT 0.192 . LmjF.33.3130 236 VSVLDAR|GM 0.115 . LmjF.33.3130 240 DARGMCK|GV 0.102 . LmjF.33.3130 297 LEEEVQR|YT 0.096 . LmjF.33.3130 300 EVQRYTK|RC 0.102 . LmjF.33.3130 301 VQRYTKR|CD 0.229 . ____________________________^_________________

  • Fasta :-

    >LmjF.33.3130 ATGGCAGAAGGCGCCGCTGCTGCTGCCGGCGCCAGCGCGCTAGCGGCCGCTTCACAGCGG CGCGGCTGCTGTTTCCCGATTCTGAGCTTCCTGCACGTACCGGGAAAAATGACGAAGCCT CTGTGGCTCATGATGGGCACCGCGTTTACATTTCGAACCCGTGAAATGGTCGAGGCTGCA TGCGGGCAGCCGGCAGCCCCGCCATCGCTGCTGCTCACAGCGAAGCACTCTTTTTCGCCG TGGGACTACACAAAAGATGCATCGCAGCTGAAGATCCCCAAAGAGTACCAAAAGCCGCGT TTTGTCATTGGCCGAGTGTACCGCACTGATGCAGACGGGAGAGCGGTGGCGGCAGACGCG GTGGGTCTCCGCCTTCTTGCTCAGCACCCCGTCCACGACGTAGCTCTACTCGCCGTCGAT GCCGCATCGTTGAAGCTGCTGCAGTGCGCTACCGACGACTCACCCGCTTATGCATTGGAC TTGGCGCACGAGGCGCTGCCGCTGTGCAAAGAGCCATATCCCGCGGCATCGGATGGACTG CTGATTGGCTTCCGCGGCGTTGGCCGGCTTGGGGAGCTTGACACGCTGGACCCGTCTGTG CTGCAACGCCTGCCACCACACGAGCGCGAGGCCCTTCTTAAGGACCTACAGGACGTGGAG GGTAAGCAGAGACGAGCCACCACAACCGTCTCGGTACTGGACGCGCGGGGCATGTGCAAA GGTGTGGGTGATCTCGCCACATGCTATCACGGCATGTCGGGCGGCCCCCTCGTCACCACA ACAGGCCAATGTGCGGGGGTGATGTACGGCCACCATCCGGATGCTCCCGGCTGCATCGGC TACACGCCCTGCGTGGACTTTGCAGGCTGGCTGGAGGAAGAGGTGCAGCGGTACACGAAG CGATGCGACTCGCATTGA
  • Download Fasta

  • Fasta :-

    MAEGAAAAAGASALAAASQRRGCCFPILSFLHVPGKMTKPLWLMMGTAFTFRTREMVEAA CGQPAAPPSLLLTAKHSFSPWDYTKDASQLKIPKEYQKPRFVIGRVYRTDADGRAVAADA VGLRLLAQHPVHDVALLAVDAASLKLLQCATDDSPAYALDLAHEALPLCKEPYPAASDGL LIGFRGVGRLGELDTLDPSVLQRLPPHEREALLKDLQDVEGKQRRATTTVSVLDARGMCK GVGDLATCYHGMSGGPLVTTTGQCAGVMYGHHPDAPGCIGYTPCVDFAGWLEEEVQRYTK RCDSH

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.33.313079 SKHSFSPWDY0.994unsp

LmjF.33.3130      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India