LmjF.34.4400 | 20s proteasome beta 7 subunit, (putative)

_IDPredictionOTHERSPmTPCS_Position
LmjF.34.4400OTHER0.8983210.0080180.093661
No Results

  • Fasta :-

    >LmjF.34.4400 MASGASVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSHSAVCATGSYADFQMMA KQVEDNIERQRMYYNVDELNPSEVFSYLHRSIYQKRCDFEPCLCQMVFIGVRDSETFLAA VDDVGTRWEDDCVATGYGAYIALPLLRQALEKNPGGLSRAQAVQILTDCLRVLFYRECRT INKFQMADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/185 Sequence name : 185 Sequence length : 220 VALUES OF COMPUTED PARAMETERS Coef20 : 4.073 CoefTot : -0.641 ChDiff : -6 ZoneTo : 54 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.153 0.095 0.498 MesoH : -0.606 0.315 -0.332 0.181 MuHd_075 : 23.452 18.016 6.271 4.491 MuHd_095 : 13.757 12.873 4.155 4.080 MuHd_100 : 14.037 15.524 4.602 4.247 MuHd_105 : 22.566 16.517 6.147 4.645 Hmax_075 : 14.233 11.200 2.540 5.960 Hmax_095 : 4.375 11.500 2.821 3.351 Hmax_100 : 10.900 16.400 1.919 4.720 Hmax_105 : 10.967 18.400 3.284 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8658 0.1342 DFMC : 0.7222 0.2778
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 220 LmjF.34.4400 MASGASVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSHSAVCATGSYADFQMMAKQVEDNIERQRMYYNVDELN 80 PSEVFSYLHRSIYQKRCDFEPCLCQMVFIGVRDSETFLAAVDDVGTRWEDDCVATGYGAYIALPLLRQALEKNPGGLSRA 160 QAVQILTDCLRVLFYRECRTINKFQMADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR 240 ................................................................................ 80 ................................................................................ 160 ............................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.34.4400 11 ASVIAIK|YN 0.093 . LmjF.34.4400 31 SYGSLAK|WP 0.058 . LmjF.34.4400 37 KWPNIPR|IK 0.072 . LmjF.34.4400 39 PNIPRIK|LL 0.064 . LmjF.34.4400 61 DFQMMAK|QV 0.089 . LmjF.34.4400 69 VEDNIER|QR 0.068 . LmjF.34.4400 71 DNIERQR|MY 0.084 . LmjF.34.4400 90 VFSYLHR|SI 0.211 . LmjF.34.4400 95 HRSIYQK|RC 0.071 . LmjF.34.4400 96 RSIYQKR|CD 0.153 . LmjF.34.4400 112 MVFIGVR|DS 0.102 . LmjF.34.4400 127 VDDVGTR|WE 0.088 . LmjF.34.4400 147 IALPLLR|QA 0.096 . LmjF.34.4400 152 LRQALEK|NP 0.072 . LmjF.34.4400 159 NPGGLSR|AQ 0.107 . LmjF.34.4400 171 ILTDCLR|VL 0.072 . LmjF.34.4400 176 LRVLFYR|EC 0.103 . LmjF.34.4400 179 LFYRECR|TI 0.234 . LmjF.34.4400 183 ECRTINK|FQ 0.061 . LmjF.34.4400 195 AAGDGVR|IS 0.084 . LmjF.34.4400 215 EGFCFEK|TA 0.069 . LmjF.34.4400 220 EKTAIIR|-- 0.085 . ____________________________^_________________

  • Fasta :-

    >LmjF.34.4400 ATGGCGTCTGGCGCATCTGTCATCGCGATCAAGTACAACGGCGGCGTACTGATGGCGGCG GACACGCTGCTGTCCTACGGGTCTCTCGCCAAGTGGCCCAACATCCCGCGCATCAAGCTG CTCGGCAGCCACTCCGCCGTGTGCGCCACGGGCAGCTACGCCGACTTCCAGATGATGGCG AAGCAGGTGGAGGACAACATTGAGCGGCAGAGGATGTACTACAACGTGGACGAGTTGAAC CCCAGTGAGGTGTTCAGCTACCTGCACCGCTCCATCTACCAGAAGCGCTGCGACTTCGAG CCGTGCCTGTGTCAGATGGTCTTCATTGGCGTGCGCGACAGCGAGACGTTTCTGGCGGCC GTGGACGACGTCGGCACGCGCTGGGAGGACGACTGCGTCGCGACCGGCTACGGCGCGTAC ATCGCACTGCCGCTGCTGCGCCAGGCGCTGGAGAAGAATCCGGGCGGCCTGTCGCGGGCC CAGGCGGTGCAGATCCTCACCGACTGCCTGCGTGTGCTCTTCTACCGCGAGTGCCGCACC ATCAACAAGTTTCAGATGGCCGACGCCGCCGGCGACGGTGTGCGCATCAGCGAGCCCTTC GACGTGGAGACGAACTGGGAGTACGAGGGCTTCTGCTTCGAGAAGACGGCCATCATCCGC TGA
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  • Fasta :-

    MASGASVIAIKYNGGVLMAADTLLSYGSLAKWPNIPRIKLLGSHSAVCATGSYADFQMMA KQVEDNIERQRMYYNVDELNPSEVFSYLHRSIYQKRCDFEPCLCQMVFIGVRDSETFLAA VDDVGTRWEDDCVATGYGAYIALPLLRQALEKNPGGLSRAQAVQILTDCLRVLFYRECRT INKFQMADAAGDGVRISEPFDVETNWEYEGFCFEKTAIIR

  • title: active site
  • coordinates: A5,D21,L23,R37,Y137,E177,T180,I181
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LmjF.34.4400      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India