LmjF.35.1580 | metacaspase

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.1580OTHER0.6163600.3796900.003950
No Results

  • Fasta :-

    >LmjF.35.1580 MADLFDIWGIGAVASLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGG RVRALFIGINYTGMRNALRGCVNDVSSMLGTLQQISFPISECCILVDDPSFPGFCGMPTR DNIIKHMLWLTGDVRPGDVLFFHFSGHGGQAKATRDSEEKYDQCLIPLDHVKNGSILDDD LFLMLVAPLPSGVRMTCVFDCCHSASMLDLPFSYVAPRVGGGGACEYMQQVRRGNFSNGD VVMFSGCTDRGTSADVQNGGHANGAATLAFTWSLLNTHGLSYLNILLKTREELRKKGRVQ VPQLTSSKPIDLYKPFSLFGMITVNASMMHCVPQQYQQRPQSLPPQVMPPATGYPVHVPP PPQGYYPPPQSPGWGLGYPVQGIPVQQATLGVSRCPPSQYLPAPPPAVYAPPPPGQRGPP QPPPAQYTFSPLPPG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/434 Sequence name : 434 Sequence length : 435 VALUES OF COMPUTED PARAMETERS Coef20 : 3.998 CoefTot : 0.141 ChDiff : 6 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.682 1.929 0.263 0.735 MesoH : 0.091 0.484 -0.176 0.249 MuHd_075 : 5.308 2.719 1.140 0.916 MuHd_095 : 21.495 12.284 3.536 3.479 MuHd_100 : 18.498 5.685 1.660 1.320 MuHd_105 : 18.705 7.447 2.012 1.894 Hmax_075 : 15.633 13.650 2.717 5.740 Hmax_095 : 17.587 17.850 3.125 6.431 Hmax_100 : 16.800 15.900 2.601 5.760 Hmax_105 : 14.800 18.667 3.512 6.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9555 0.0445 DFMC : 0.9823 0.0177
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 435 LmjF.35.1580 MADLFDIWGIGAVASLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGGRVRALFIGINYTGMRNALRG 80 CVNDVSSMLGTLQQISFPISECCILVDDPSFPGFCGMPTRDNIIKHMLWLTGDVRPGDVLFFHFSGHGGQAKATRDSEEK 160 YDQCLIPLDHVKNGSILDDDLFLMLVAPLPSGVRMTCVFDCCHSASMLDLPFSYVAPRVGGGGACEYMQQVRRGNFSNGD 240 VVMFSGCTDRGTSADVQNGGHANGAATLAFTWSLLNTHGLSYLNILLKTREELRKKGRVQVPQLTSSKPIDLYKPFSLFG 320 MITVNASMMHCVPQQYQQRPQSLPPQVMPPATGYPVHVPPPPQGYYPPPQSPGWGLGYPVQGIPVQQATLGVSRCPPSQY 400 LPAPPPAVYAPPPPGQRGPPQPPPAQYTFSPLPPG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.1580 29 GLLLVDR|PK 0.080 . LmjF.35.1580 31 LLVDRPK|RV 0.072 . LmjF.35.1580 32 LVDRPKR|VD 0.384 . LmjF.35.1580 39 VDINAGR|RL 0.077 . LmjF.35.1580 40 DINAGRR|LI 0.161 . LmjF.35.1580 46 RLIHTVR|PI 0.105 . LmjF.35.1580 52 RPIIPYR|AP 0.096 . LmjF.35.1580 61 VPYTGGR|VR 0.069 . LmjF.35.1580 63 YTGGRVR|AL 0.113 . LmjF.35.1580 75 INYTGMR|NA 0.089 . LmjF.35.1580 79 GMRNALR|GC 0.087 . LmjF.35.1580 120 FCGMPTR|DN 0.112 . LmjF.35.1580 125 TRDNIIK|HM 0.069 . LmjF.35.1580 135 WLTGDVR|PG 0.076 . LmjF.35.1580 152 GHGGQAK|AT 0.094 . LmjF.35.1580 155 GQAKATR|DS 0.186 . LmjF.35.1580 160 TRDSEEK|YD 0.064 . LmjF.35.1580 172 IPLDHVK|NG 0.066 . LmjF.35.1580 194 PLPSGVR|MT 0.070 . LmjF.35.1580 218 FSYVAPR|VG 0.101 . LmjF.35.1580 232 EYMQQVR|RG 0.072 . LmjF.35.1580 233 YMQQVRR|GN 0.162 . LmjF.35.1580 250 FSGCTDR|GT 0.113 . LmjF.35.1580 288 YLNILLK|TR 0.060 . LmjF.35.1580 290 NILLKTR|EE 0.066 . LmjF.35.1580 294 KTREELR|KK 0.095 . LmjF.35.1580 295 TREELRK|KG 0.099 . LmjF.35.1580 296 REELRKK|GR 0.089 . LmjF.35.1580 298 ELRKKGR|VQ 0.114 . LmjF.35.1580 308 PQLTSSK|PI 0.061 . LmjF.35.1580 314 KPIDLYK|PF 0.072 . LmjF.35.1580 339 PQQYQQR|PQ 0.084 . LmjF.35.1580 394 ATLGVSR|CP 0.067 . LmjF.35.1580 417 PPPPGQR|GP 0.074 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.1580 ATGGCAGACCTTTTTGATATTTGGGGGATAGGGGCCGTCGCCAGTCTGATCCCGATGCTC GCGAACGGTCTTCTTTTGGTTGACCGGCCCAAACGGGTCGACATTAATGCCGGAAGGCGG CTCATTCACACAGTGCGGCCCATCATTCCTTACCGTGCCCCGGTGCCGTACACCGGCGGC CGTGTCCGTGCGCTTTTCATCGGAATCAACTACACGGGTATGCGCAACGCACTGCGTGGC TGCGTCAACGATGTTAGCTCGATGCTGGGCACGCTGCAGCAGATCTCCTTCCCGATTAGC GAGTGCTGCATCCTCGTCGACGACCCGTCGTTCCCCGGCTTCTGCGGCATGCCCACCCGC GACAACATCATCAAGCACATGCTGTGGCTGACCGGCGACGTACGCCCCGGTGATGTGCTT TTTTTCCACTTCTCCGGCCACGGCGGACAAGCCAAGGCAACCCGAGACTCGGAAGAGAAG TACGACCAGTGTCTCATCCCACTCGACCACGTGAAGAACGGCAGCATTCTCGACGATGAT CTCTTCCTCATGCTCGTAGCCCCGCTGCCGTCTGGGGTGCGCATGACGTGCGTCTTTGAC TGCTGTCACTCAGCCAGCATGCTGGATCTGCCCTTCAGCTACGTGGCACCGAGAGTAGGC GGCGGCGGGGCATGCGAGTACATGCAACAGGTACGCCGCGGCAACTTCTCGAACGGCGAC GTTGTCATGTTCAGCGGGTGCACGGATAGAGGCACCAGCGCAGATGTGCAGAACGGCGGC CACGCAAACGGTGCCGCCACTCTCGCCTTCACGTGGTCTCTTCTGAACACGCATGGGCTC TCCTACCTTAATATCCTTCTCAAGACACGAGAGGAGCTGCGCAAAAAAGGTCGGGTGCAG GTGCCGCAGCTCACCAGCTCGAAGCCGATCGATCTGTACAAGCCCTTCTCCCTCTTCGGC ATGATTACGGTAAACGCGTCCATGATGCATTGCGTGCCGCAGCAGTACCAGCAACGTCCG CAGAGCCTCCCGCCGCAGGTGATGCCGCCTGCAACGGGTTACCCAGTCCACGTACCGCCG CCGCCGCAAGGCTACTACCCTCCACCACAGAGTCCAGGTTGGGGACTTGGCTACCCGGTG CAAGGGATACCGGTGCAGCAGGCAACTCTTGGCGTGTCGCGGTGTCCTCCATCGCAGTAC TTACCTGCGCCTCCGCCAGCAGTGTATGCGCCACCTCCACCCGGGCAGCGCGGGCCACCG CAGCCCCCTCCAGCCCAGTACACGTTCAGCCCACTCCCGCCTGGCTAA
  • Download Fasta

  • Fasta :-

    MADLFDIWGIGAVASLIPMLANGLLLVDRPKRVDINAGRRLIHTVRPIIPYRAPVPYTGG RVRALFIGINYTGMRNALRGCVNDVSSMLGTLQQISFPISECCILVDDPSFPGFCGMPTR DNIIKHMLWLTGDVRPGDVLFFHFSGHGGQAKATRDSEEKYDQCLIPLDHVKNGSILDDD LFLMLVAPLPSGVRMTCVFDCCHSASMLDLPFSYVAPRVGGGGACEYMQQVRRGNFSNGD VVMFSGCTDRGTSADVQNGGHANGAATLAFTWSLLNTHGLSYLNILLKTREELRKKGRVQ VPQLTSSKPIDLYKPFSLFGMITVNASMMHCVPQQYQQRPQSLPPQVMPPATGYPVHVPP PPQGYYPPPQSPGWGLGYPVQGIPVQQATLGVSRCPPSQYLPAPPPAVYAPPPPGQRGPP QPPPAQYTFSPLPPG

    No Results
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IDSitePeptideScoreMethod
LmjF.35.1580157 SATRDSEEKY0.997unsp

LmjF.35.1580      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India