LmjF.35.1980 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0030964      GO:0005739      

  • Curated_GO_Components:  NADH dehydrogenase complex      mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.1980mTP0.1534640.0012650.845271CS pos: 23-24. TRF-KW. Pr: 0.1445
No Results

  • Fasta :-

    >LmjF.35.1980 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHVITCAHVITPWDYPNYYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYISRPRLEINETLKVGDYVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHAVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDVFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGGVKEHKHWELDESRTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQE TQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQGERKDYSPTGVYANVEEFKNKD VWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTEPGFDPL KGYGHYGGSADAGAANFNPEYASAHKGSGDAYSYAQAAQQAAREQPGDHASPASTPPPSP PPPNESVIDRKKRERREAEAKYQEELRRRHGQRAVPFGDEDLSGFWERR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/772 Sequence name : 772 Sequence length : 589 VALUES OF COMPUTED PARAMETERS Coef20 : 4.855 CoefTot : 0.352 ChDiff : -8 ZoneTo : 28 KR : 7 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 0.818 -0.005 0.397 MesoH : -0.211 -0.002 -0.388 0.190 MuHd_075 : 21.200 15.676 5.218 6.426 MuHd_095 : 32.777 11.037 5.226 5.740 MuHd_100 : 29.669 14.047 5.670 5.560 MuHd_105 : 27.467 14.525 6.218 6.258 Hmax_075 : 7.467 8.750 -0.265 3.838 Hmax_095 : 11.550 8.313 -0.008 3.036 Hmax_100 : 16.500 15.700 2.877 5.240 Hmax_105 : 14.400 16.700 2.318 5.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0489 0.9511 DFMC : 0.0637 0.9363 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.1786 CMi = 0.33482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 589 LmjF.35.1980 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSGHWTHVITCAHVITPWDYPNY 80 YPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQHVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYISR 160 PRLEINETLKVGDYVWVYGMSAHESLFDEEKGPEPLMIPTGVRARVHAVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM 240 RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDVFEFLLEVEKQMKNPVARQSQEETRFEQRRRAEGGVKEHKHWELDES 320 RTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQETQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQGE 400 RKDYSPTGVYANVEEFKNKDVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTEPGFDPL 480 KGYGHYGGSADAGAANFNPEYASAHKGSGDAYSYAQAAQQAAREQPGDHASPASTPPPSPPPPNESVIDRKKRERREAEA 560 KYQEELRRRHGQRAVPFGDEDLSGFWERR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........................................................................P..P.... 560 ............................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.1980 3 ----MLR|RS 0.092 . LmjF.35.1980 4 ---MLRR|SS 0.156 . LmjF.35.1980 11 SSVVLAR|FQ 0.103 . LmjF.35.1980 22 SMAVQTR|FK 0.164 . LmjF.35.1980 24 AVQTRFK|WR 0.064 . LmjF.35.1980 26 QTRFKWR|HK 0.135 . LmjF.35.1980 28 RFKWRHK|ET 0.072 . LmjF.35.1980 32 RHKETDR|WR 0.075 . LmjF.35.1980 34 KETDRWR|RL 0.091 . LmjF.35.1980 35 ETDRWRR|LM 0.406 . LmjF.35.1980 88 PPQGPTR|FV 0.196 . LmjF.35.1980 103 DTMTQIR|LV 0.138 . LmjF.35.1980 114 QGNAVYK|HF 0.080 . LmjF.35.1980 129 FVHSNPR|LD 0.079 . LmjF.35.1980 142 HPEQNLK|RS 0.072 . LmjF.35.1980 143 PEQNLKR|SG 0.321 . LmjF.35.1980 148 KRSGEMK|MM 0.095 . LmjF.35.1980 160 NEGYISR|PR 0.076 . LmjF.35.1980 162 GYISRPR|LE 0.069 . LmjF.35.1980 170 EINETLK|VG 0.059 . LmjF.35.1980 191 SLFDEEK|GP 0.065 . LmjF.35.1980 203 MIPTGVR|AR 0.072 . LmjF.35.1980 205 PTGVRAR|VH 0.082 . LmjF.35.1980 211 RVHAVTR|EH 0.088 . LmjF.35.1980 227 LEDNPDR|GR 0.092 . LmjF.35.1980 229 DNPDRGR|IQ 0.075 . LmjF.35.1980 241 CGSVVMR|NG 0.104 . LmjF.35.1980 244 VVMRNGK|CV 0.253 . LmjF.35.1980 260 HEESDCK|EL 0.057 . LmjF.35.1980 283 FLLEVEK|QM 0.052 . LmjF.35.1980 286 EVEKQMK|NP 0.061 . LmjF.35.1980 291 MKNPVAR|QS 0.162 . LmjF.35.1980 298 QSQEETR|FE 0.092 . LmjF.35.1980 302 ETRFEQR|RR 0.080 . LmjF.35.1980 303 TRFEQRR|RA 0.334 . LmjF.35.1980 304 RFEQRRR|AE 0.190 . LmjF.35.1980 310 RAEGGVK|EH 0.059 . LmjF.35.1980 313 GGVKEHK|HW 0.070 . LmjF.35.1980 321 WELDESR|TA 0.084 . LmjF.35.1980 324 DESRTAR|HI 0.324 . LmjF.35.1980 338 LWHMEEK|WV 0.095 . LmjF.35.1980 353 NSAVFGR|SG 0.169 . LmjF.35.1980 374 YDMNTAK|TN 0.077 . LmjF.35.1980 379 AKTNGDR|PG 0.078 . LmjF.35.1980 394 STTTTGK|PV 0.091 . LmjF.35.1980 401 PVMQGER|KD 0.064 . LmjF.35.1980 402 VMQGERK|DY 0.112 . LmjF.35.1980 417 ANVEEFK|NK 0.063 . LmjF.35.1980 419 VEEFKNK|DV 0.120 . LmjF.35.1980 431 NVSSEMR|SL 0.155 . LmjF.35.1980 441 NETVDSK|DA 0.074 . LmjF.35.1980 450 ESLNMMR|KS 0.072 . LmjF.35.1980 451 SLNMMRK|SL 0.207 . LmjF.35.1980 457 KSLENIR|AQ 0.096 . LmjF.35.1980 460 ENIRAQR|AM 0.289 . LmjF.35.1980 464 AQRAMEK|MK 0.076 . LmjF.35.1980 466 RAMEKMK|ET 0.074 . LmjF.35.1980 472 KETVMNR|TE 0.066 . LmjF.35.1980 481 PGFDPLK|GY 0.072 . LmjF.35.1980 506 EYASAHK|GS 0.073 . LmjF.35.1980 523 AAQQAAR|EQ 0.084 . LmjF.35.1980 550 NESVIDR|KK 0.105 . LmjF.35.1980 551 ESVIDRK|KR 0.081 . LmjF.35.1980 552 SVIDRKK|RE 0.077 . LmjF.35.1980 553 VIDRKKR|ER 0.551 *ProP* LmjF.35.1980 555 DRKKRER|RE 0.086 . LmjF.35.1980 556 RKKRERR|EA 0.739 *ProP* LmjF.35.1980 561 RREAEAK|YQ 0.080 . LmjF.35.1980 567 KYQEELR|RR 0.083 . LmjF.35.1980 568 YQEELRR|RH 0.118 . LmjF.35.1980 569 QEELRRR|HG 0.115 . LmjF.35.1980 573 RRRHGQR|AV 0.195 . LmjF.35.1980 588 LSGFWER|R- 0.099 . LmjF.35.1980 589 SGFWERR|-- 0.151 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.1980 ATGCTGCGCCGCAGCTCTGTCGTGCTGGCGAGGTTCCAGCCTTACTCGATGGCGGTGCAA ACCCGGTTTAAATGGCGGCACAAGGAGACGGACCGGTGGCGGCGGCTGATGGACGCGACG TGCTTCCAGGTCGATTGGCTCGGCCAGACAGCCGGCCCGAATTTCGCGCAGTACAGCGGG CACTGGACGCACGTGATCACCTGCGCGCACGTGATCACGCCGTGGGACTACCCCAACTAC TACCCCCCGCAGGGGCCAACCCGATTCGTCTCGCACATTACTCTGGCGGACACCATGACG CAGATTCGGCTCGTCTCGATGCAGGGCAATGCCGTGTACAAGCATTTCACGTCAAATCAA CACGTCTTCGTGCATTCAAACCCGCGGCTGGACCTGTGTGTCCTGCATCCGGAGCAAAAT CTGAAGCGCAGTGGTGAGATGAAGATGATGTGGATGCAGAACGAAGGATACATTTCACGT CCGCGGTTGGAGATCAACGAAACGCTGAAGGTCGGCGATTACGTCTGGGTGTACGGCATG TCGGCGCACGAGTCGCTATTTGACGAGGAAAAGGGGCCAGAGCCTCTCATGATCCCTACC GGCGTCCGCGCTCGCGTGCACGCCGTCACGCGCGAGCACTTCTTTCTGGACACAACGGCG CTCGAGGACAACCCAGATCGTGGCCGCATCCAGATGGGCATGTGCGGCTCCGTCGTGATG CGCAACGGCAAATGTGTCGGCATGCTGACGGCGACGGTGCACGAAGAGAGCGACTGCAAA GAGCTCGCCGGGACGGCCATGTGCACTTACTCGTCCGACGTCTTCGAGTTCCTGCTGGAG GTGGAAAAGCAAATGAAGAACCCCGTTGCGCGTCAGAGTCAGGAGGAGACCCGCTTTGAG CAGCGGCGCCGCGCCGAGGGGGGCGTGAAGGAGCACAAACACTGGGAGCTGGACGAGAGC CGCACGGCCCGCCACATCCCTGTCCCTGTTTCGCTCTGGCATATGGAGGAGAAATGGGTG ACGGAGGAGGATTACATGAACAGCGCCGTCTTTGGCCGCAGCGGCGCCTTTAACCAAGAA ACACAGGAGAGCGCGCTGGGCTACGACATGAACACCGCCAAGACGAACGGCGACCGCCCA GGTGACATCGACTCCTTCATGTCAACCACGACGACCGGCAAGCCTGTAATGCAAGGCGAG CGGAAGGACTACAGCCCGACCGGCGTGTACGCGAACGTGGAGGAGTTTAAGAACAAGGAT GTGTGGGACTACAACGTGAGCTCCGAGATGCGCTCTCTGTTCAACGAAACAGTCGACAGC AAAGACGCTGAGAGCCTCAACATGATGCGCAAGTCGCTTGAGAACATCCGTGCGCAGCGG GCGATGGAGAAGATGAAGGAGACTGTGATGAACCGCACGGAGCCGGGCTTCGATCCGCTG AAGGGCTACGGCCACTACGGCGGCAGCGCCGACGCCGGGGCCGCCAACTTCAACCCAGAG TACGCTTCAGCCCACAAAGGTAGTGGCGACGCCTACAGCTACGCGCAAGCAGCTCAGCAG GCGGCGCGTGAGCAGCCAGGGGACCACGCATCGCCGGCGTCGACTCCGCCGCCGTCGCCG CCGCCGCCGAACGAGTCCGTCATAGATCGCAAGAAGCGAGAGCGACGCGAGGCAGAGGCC AAGTATCAGGAGGAGCTGCGCCGCCGTCATGGGCAGCGCGCCGTTCCCTTCGGCGATGAG GACCTCAGCGGCTTCTGGGAGCGGCGCTGA
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  • Fasta :-

    MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHVITCAHVITPWDYPNYYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYISRPRLEINETLKVGDYVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHAVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDVFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGGVKEHKHWELDESRTARHIPVPVSLWHMEEKWVTEEDYMNSAVFGRSGAFNQE TQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQGERKDYSPTGVYANVEEFKNKD VWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTEPGFDPL KGYGHYGGSADAGAANFNPEYASAHKGSGDAYSYAQAAQQAAREQPGDHASPASTPPPSP PPPNESVIDRKKRERREAEAKYQEELRRRHGQRAVPFGDEDLSGFWERR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.35.1980345 YTEEDYMNSA0.993unspLmjF.35.1980345 YTEEDYMNSA0.993unspLmjF.35.1980345 YTEEDYMNSA0.993unspLmjF.35.1980452 SMMRKSLENI0.991unspLmjF.35.19806 SLRRSSVVLA0.995unspLmjF.35.1980293 SVARQSQEET0.998unsp

LmjF.35.1980      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India