LmjF.35.2800 | Alpha/beta hydrolase family, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.2800OTHER0.9224390.0688020.008758
No Results

  • Fasta :-

    >LmjF.35.2800 MIFGSALVLVVAAINSSANRYLPAKLKLFAPSVGWFIMNLFIARGPLVWYVCSLAIQGLF ATLLFMALGFKSDLVLRAVILPFLVTAMAAWAKEVLPSVGGWTTVAVTLTQLWSILGGII IHACYPANILQVLEQQDARNRRVRATASTLVRKKDKSVDVRMVPSLDGKTELQTLVVKQG YETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV AAVARAYIEKERIDEHNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFS YLTPKVTRKVFPWFVGDLHTLAGWDSVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAVALCGAPPSYHNSLLSAFDNYEEVCVRMSKMFSM
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/381 Sequence name : 381 Sequence length : 400 VALUES OF COMPUTED PARAMETERS Coef20 : 4.825 CoefTot : 0.121 ChDiff : 4 ZoneTo : 133 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.088 2.200 0.349 0.768 MesoH : 1.117 1.431 0.065 0.559 MuHd_075 : 31.452 27.682 9.813 8.734 MuHd_095 : 23.990 23.798 7.698 6.723 MuHd_100 : 25.139 22.716 7.121 6.369 MuHd_105 : 20.975 21.003 5.859 6.011 Hmax_075 : 12.600 27.500 5.495 8.100 Hmax_095 : 19.100 24.500 4.219 4.533 Hmax_100 : 20.300 23.700 4.059 7.720 Hmax_105 : 18.900 20.183 2.541 6.965 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3907 0.6093 DFMC : 0.0440 0.9560 This protein is probably imported in mitochondria. f(Ser) = 0.0602 f(Arg) = 0.0226 CMi = 0.59215 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 400 LmjF.35.2800 MIFGSALVLVVAAINSSANRYLPAKLKLFAPSVGWFIMNLFIARGPLVWYVCSLAIQGLFATLLFMALGFKSDLVLRAVI 80 LPFLVTAMAAWAKEVLPSVGGWTTVAVTLTQLWSILGGIIIHACYPANILQVLEQQDARNRRVRATASTLVRKKDKSVDV 160 RMVPSLDGKTELQTLVVKQGYETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV 240 AAVARAYIEKERIDEHNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFSYLTPKVTRKVFPWFVGDLHT 320 LAGWDSVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDGADADKAVALCGAPPSYHNSLLSAFDNYEEVCVRMSKMFSM 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.2800 20 INSSANR|YL 0.140 . LmjF.35.2800 25 NRYLPAK|LK 0.063 . LmjF.35.2800 27 YLPAKLK|LF 0.066 . LmjF.35.2800 44 MNLFIAR|GP 0.076 . LmjF.35.2800 71 FMALGFK|SD 0.063 . LmjF.35.2800 77 KSDLVLR|AV 0.093 . LmjF.35.2800 93 AMAAWAK|EV 0.088 . LmjF.35.2800 139 LEQQDAR|NR 0.074 . LmjF.35.2800 141 QQDARNR|RV 0.099 . LmjF.35.2800 142 QDARNRR|VR 0.349 . LmjF.35.2800 144 ARNRRVR|AT 0.383 . LmjF.35.2800 152 TASTLVR|KK 0.121 . LmjF.35.2800 153 ASTLVRK|KD 0.072 . LmjF.35.2800 154 STLVRKK|DK 0.132 . LmjF.35.2800 156 LVRKKDK|SV 0.132 . LmjF.35.2800 161 DKSVDVR|MV 0.120 . LmjF.35.2800 169 VPSLDGK|TE 0.063 . LmjF.35.2800 178 LQTLVVK|QG 0.058 . LmjF.35.2800 185 QGYETSR|WI 0.096 . LmjF.35.2800 212 VISDALK|AH 0.059 . LmjF.35.2800 221 AILYNPR|GI 0.111 . LmjF.35.2800 245 DVAAVAR|AY 0.117 . LmjF.35.2800 250 ARAYIEK|ER 0.070 . LmjF.35.2800 252 AYIEKER|ID 0.092 . LmjF.35.2800 287 ASLVLDR|TF 0.088 . LmjF.35.2800 305 FSYLTPK|VT 0.075 . LmjF.35.2800 308 LTPKVTR|KV 0.127 . LmjF.35.2800 309 TPKVTRK|VF 0.088 . LmjF.35.2800 328 AGWDSVR|HN 0.088 . LmjF.35.2800 331 DSVRHNR|KL 0.172 . LmjF.35.2800 332 SVRHNRK|LV 0.104 . LmjF.35.2800 338 KLVLYSK|QD 0.064 . LmjF.35.2800 344 KQDEVIK|FD 0.065 . LmjF.35.2800 352 DISSIAR|LP 0.083 . LmjF.35.2800 358 RLPQFQK|DG 0.073 . LmjF.35.2800 365 DGADADK|AV 0.070 . LmjF.35.2800 393 YEEVCVR|MS 0.072 . LmjF.35.2800 396 VCVRMSK|MF 0.131 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.2800 ATGATCTTCGGTTCAGCGCTGGTGCTCGTGGTGGCAGCCATCAACAGCTCCGCCAACCGC TATCTTCCTGCCAAGTTGAAGCTGTTCGCGCCCTCAGTGGGGTGGTTCATCATGAATCTG TTCATCGCCCGAGGCCCTCTCGTGTGGTATGTGTGCTCGTTGGCGATTCAAGGACTTTTT GCCACGCTGCTCTTCATGGCTCTCGGCTTCAAGAGCGACCTTGTTTTGCGTGCAGTCATC CTTCCGTTTCTGGTCACCGCGATGGCGGCCTGGGCAAAGGAGGTTCTGCCCTCGGTTGGG GGATGGACTACTGTCGCGGTCACCCTCACGCAGCTCTGGAGCATCCTTGGGGGCATCATA ATCCACGCCTGCTATCCGGCCAACATTCTACAGGTCCTTGAACAACAGGATGCGCGCAAC CGCCGCGTCCGTGCGACTGCCAGCACGCTGGTTCGAAAGAAAGACAAGTCTGTCGATGTG CGCATGGTGCCATCGCTGGATGGAAAGACGGAGCTGCAGACGCTGGTGGTAAAGCAGGGG TATGAGACGTCGCGCTGGATTGTGTACTGCGGCGGCAACGCGGAGTTCCTGGAGAACAGC CTCAACGACATCCACGTCATCAGCGACGCTCTCAAGGCACACGCCATCCTGTATAACCCA CGCGGCATCGGCTTCAGCACCGGCTATCTCTCGCAGCTCGGTGAATTAGTCGAGGACGTC GCCGCAGTGGCGCGGGCGTACATTGAGAAGGAGAGGATCGACGAGCACAACTTGCTTTTC TTTGGTCATAGCATCGGCGGCGGTACTGCGGCGCAGGTGGTGGCGGAATGCTACCCGCAT GCCTCCCTCGTGCTGGATCGGACCTTCTCGTCCATGTCGGACGCAGCTGTAGCCTTTTCC TATCTCACCCCCAAGGTCACACGCAAGGTTTTTCCCTGGTTTGTCGGCGACCTTCATACT CTGGCCGGCTGGGACAGTGTTAGGCACAACCGTAAGCTCGTCCTCTACTCGAAGCAGGAT GAGGTGATCAAGTTCGACATCTCCTCCATCGCTCGCCTGCCGCAGTTTCAGAAGGATGGC GCGGACGCCGACAAGGCTGTTGCGCTTTGTGGCGCCCCGCCGTCTTACCACAACAGCCTC TTGAGCGCCTTTGACAACTACGAGGAGGTATGTGTCCGCATGAGTAAGATGTTCTCCATG TAA
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  • Fasta :-

    MIFGSALVLVVAAINSSANRYLPAKLKLFAPSVGWFIMNLFIARGPLVWYVCSLAIQGLF ATLLFMALGFKSDLVLRAVILPFLVTAMAAWAKEVLPSVGGWTTVAVTLTQLWSILGGII IHACYPANILQVLEQQDARNRRVRATASTLVRKKDKSVDVRMVPSLDGKTELQTLVVKQG YETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV AAVARAYIEKERIDEHNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFS YLTPKVTRKVFPWFVGDLHTLAGWDSVRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAVALCGAPPSYHNSLLSAFDNYEEVCVRMSKMFSM

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LmjF.35.2800      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India