LmjF.35.3840 | proteasome beta 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.35.3840OTHER0.9997570.0001180.000125
No Results

  • Fasta :-

    >LmjF.35.3840 MPGFNFENVQRNLNLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGSIAAMAQLEAAYKDNMTCEEA KELVTSAIHKGIFNDPYSGTQVDVCVITKGKTELTIGYHTPNKRMHPRQEVMLPPGTTPV LKEEIRHLVDIVDV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/853 Sequence name : 853 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 2.909 CoefTot : -0.637 ChDiff : -2 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.435 0.128 0.606 MesoH : -0.301 0.377 -0.290 0.250 MuHd_075 : 21.523 14.292 5.651 3.926 MuHd_095 : 18.504 9.138 3.138 3.357 MuHd_100 : 20.429 10.250 4.689 3.942 MuHd_105 : 21.824 11.941 6.328 4.721 Hmax_075 : -4.433 0.350 -4.487 1.580 Hmax_095 : -1.225 0.525 -3.792 1.628 Hmax_100 : 1.000 1.800 -2.322 2.370 Hmax_105 : 1.983 6.183 -1.122 3.803 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9689 0.0311 DFMC : 0.9548 0.0452
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 LmjF.35.3840 MPGFNFENVQRNLNLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCCRKIHYMAPNIMCCGAGTSAD 80 TEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQGHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGS 160 IAAMAQLEAAYKDNMTCEEAKELVTSAIHKGIFNDPYSGTQVDVCVITKGKTELTIGYHTPNKRMHPRQEVMLPPGTTPV 240 LKEEIRHLVDIVDV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.35.3840 11 NFENVQR|NL 0.082 . LmjF.35.3840 24 EGYSAPR|TL 0.099 . LmjF.35.3840 27 SAPRTLK|TG 0.112 . LmjF.35.3840 38 IVGVVYK|DG 0.071 . LmjF.35.3840 48 VLGADTR|AT 0.098 . LmjF.35.3840 58 GSIVADK|CC 0.069 . LmjF.35.3840 61 VADKCCR|KI 0.087 . LmjF.35.3840 62 ADKCCRK|IH 0.077 . LmjF.35.3840 96 SHLALHR|LE 0.082 . LmjF.35.3840 101 HRLETGK|QS 0.072 . LmjF.35.3840 104 ETGKQSR|VL 0.100 . LmjF.35.3840 113 EALTLLK|RH 0.049 . LmjF.35.3840 114 ALTLLKR|HL 0.153 . LmjF.35.3840 118 LKRHLYR|YQ 0.144 . LmjF.35.3840 150 PHGSTDR|LP 0.075 . LmjF.35.3840 172 QLEAAYK|DN 0.083 . LmjF.35.3840 181 MTCEEAK|EL 0.067 . LmjF.35.3840 190 VTSAIHK|GI 0.077 . LmjF.35.3840 209 DVCVITK|GK 0.060 . LmjF.35.3840 211 CVITKGK|TE 0.061 . LmjF.35.3840 223 GYHTPNK|RM 0.062 . LmjF.35.3840 224 YHTPNKR|MH 0.170 . LmjF.35.3840 228 NKRMHPR|QE 0.109 . LmjF.35.3840 242 GTTPVLK|EE 0.062 . LmjF.35.3840 246 VLKEEIR|HL 0.095 . ____________________________^_________________

  • Fasta :-

    >LmjF.35.3840 ATGCCCGGGTTCAACTTTGAAAATGTTCAGCGTAACCTCAACCTGGAGAATGAGGGCTAC TCTGCGCCACGAACGCTGAAGACCGGTACGACTATCGTCGGTGTCGTTTACAAGGACGGC GTTGTGCTCGGAGCTGACACTCGTGCCACTGAGGGCAGTATTGTAGCGGACAAGTGCTGC CGCAAGATCCACTACATGGCTCCGAATATTATGTGCTGCGGTGCCGGCACGTCGGCGGAC ACAGAGGCCGTGACGAATATGGTGTCCTCGCACCTGGCCCTGCACCGGCTCGAGACGGGC AAGCAGTCCCGCGTGCTCGAGGCACTGACGTTGCTGAAGCGCCACTTGTACCGCTACCAG GGTCACGTCAGCGCAGCGCTTGTGCTTGGTGGCGTGGATGTGGAGGGCCCGTTCTTAGCC ACCATCGCGCCACACGGCAGCACCGATCGTCTGCCCTTCGTGACGATGGGCAGCGGTAGC ATTGCCGCCATGGCTCAGTTGGAGGCTGCCTACAAGGACAACATGACGTGCGAGGAGGCC AAGGAGCTGGTGACGTCGGCTATCCACAAGGGCATCTTTAATGATCCCTACAGCGGTACC CAGGTGGACGTGTGCGTCATCACGAAGGGCAAGACGGAGCTCACAATCGGTTACCACACG CCGAACAAGCGCATGCACCCGCGGCAGGAAGTCATGCTCCCTCCTGGTACTACGCCGGTG CTCAAGGAGGAGATCCGTCACTTGGTTGATATAGTGGATGTCTGA
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  • Fasta :-

    MPGFNFENVQRNLNLENEGYSAPRTLKTGTTIVGVVYKDGVVLGADTRATEGSIVADKCC RKIHYMAPNIMCCGAGTSADTEAVTNMVSSHLALHRLETGKQSRVLEALTLLKRHLYRYQ GHVSAALVLGGVDVEGPFLATIAPHGSTDRLPFVTMGSGSIAAMAQLEAAYKDNMTCEEA KELVTSAIHKGIFNDPYSGTQVDVCVITKGKTELTIGYHTPNKRMHPRQEVMLPPGTTPV LKEEIRHLVDIVDV

  • title: active site
  • coordinates: T30,D46,R48,K62,S158,D195,S198,G199
No Results
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LmjF.35.3840      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India