LmjF.36.0200 | mitochondrial inner membrane signal peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.0200SP0.4900930.4995180.010390CS pos: 35-36. VSC-AV. Pr: 0.7114
No Results

  • Fasta :-

    >LmjF.36.0200 MPWRQWWSAIRCSQYGDVPFVLLGVFIGWNSDVSCAVKGVSMVPTLHPGEYIVFVPYTML QVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRTQAEEWGKEHYVEVMPALYSPP AAQHTNGDDEDSTEIDSVANSERAYFDYVARNTVRSKDWDSCIDRIPNPSQWVWLEGDNK SESFDSRRCGPVPIECIRGLVLASIWPSPHTLQRPPPPPRASQLH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/718 Sequence name : 718 Sequence length : 225 VALUES OF COMPUTED PARAMETERS Coef20 : 3.998 CoefTot : -2.800 ChDiff : -4 ZoneTo : 74 KR : 5 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.094 1.512 0.211 0.603 MesoH : 0.056 0.799 -0.197 0.346 MuHd_075 : 24.003 14.193 6.676 6.834 MuHd_095 : 26.234 18.989 6.371 5.838 MuHd_100 : 29.949 17.693 7.184 6.086 MuHd_105 : 36.152 21.944 9.156 7.524 Hmax_075 : 10.588 11.200 3.751 4.970 Hmax_095 : 17.325 14.600 2.094 5.758 Hmax_100 : 15.900 15.600 2.507 4.050 Hmax_105 : 20.183 19.483 2.634 5.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9279 0.0721 DFMC : 0.9250 0.0750
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 225 LmjF.36.0200 MPWRQWWSAIRCSQYGDVPFVLLGVFIGWNSDVSCAVKGVSMVPTLHPGEYIVFVPYTMLQVRRWFNAPLVNLSDVVVVK 80 VSDDLSVCKRVVKCTSSRTQAEEWGKEHYVEVMPALYSPPAAQHTNGDDEDSTEIDSVANSERAYFDYVARNTVRSKDWD 160 SCIDRIPNPSQWVWLEGDNKSESFDSRRCGPVPIECIRGLVLASIWPSPHTLQRPPPPPRASQLH 240 ................................................................................ 80 ................................................................................ 160 ................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.0200 4 ---MPWR|QW 0.109 . LmjF.36.0200 11 QWWSAIR|CS 0.082 . LmjF.36.0200 38 DVSCAVK|GV 0.096 . LmjF.36.0200 63 YTMLQVR|RW 0.082 . LmjF.36.0200 64 TMLQVRR|WF 0.158 . LmjF.36.0200 80 SDVVVVK|VS 0.065 . LmjF.36.0200 89 DDLSVCK|RV 0.067 . LmjF.36.0200 90 DLSVCKR|VV 0.214 . LmjF.36.0200 93 VCKRVVK|CT 0.126 . LmjF.36.0200 98 VKCTSSR|TQ 0.080 . LmjF.36.0200 106 QAEEWGK|EH 0.061 . LmjF.36.0200 143 SVANSER|AY 0.117 . LmjF.36.0200 151 YFDYVAR|NT 0.083 . LmjF.36.0200 155 VARNTVR|SK 0.109 . LmjF.36.0200 157 RNTVRSK|DW 0.086 . LmjF.36.0200 165 WDSCIDR|IP 0.096 . LmjF.36.0200 180 WLEGDNK|SE 0.063 . LmjF.36.0200 187 SESFDSR|RC 0.131 . LmjF.36.0200 188 ESFDSRR|CG 0.105 . LmjF.36.0200 198 VPIECIR|GL 0.078 . LmjF.36.0200 214 SPHTLQR|PP 0.097 . LmjF.36.0200 220 RPPPPPR|AS 0.089 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.0200 ATGCCGTGGCGGCAATGGTGGTCGGCGATTCGCTGCTCCCAGTACGGAGACGTCCCTTTT GTGCTTCTCGGCGTTTTCATCGGCTGGAACAGTGATGTGAGCTGTGCCGTGAAGGGGGTA TCCATGGTGCCCACCCTACACCCCGGTGAGTACATCGTCTTTGTCCCGTACACAATGCTT CAGGTCCGCCGCTGGTTCAATGCCCCTCTGGTAAACCTGAGTGATGTGGTGGTCGTCAAG GTGTCCGATGACCTTTCAGTTTGCAAGAGAGTTGTCAAGTGCACCTCTAGCAGAACACAG GCTGAGGAATGGGGCAAGGAGCACTACGTGGAAGTGATGCCTGCGCTGTACAGCCCGCCG GCTGCACAGCACACGAATGGCGACGACGAGGACTCGACAGAGATCGACAGTGTGGCAAAC TCGGAGCGGGCCTACTTCGACTACGTTGCCCGTAACACCGTCCGCTCTAAAGACTGGGAC TCGTGCATTGATCGCATCCCCAATCCCTCTCAGTGGGTTTGGCTGGAGGGCGACAACAAA TCCGAGAGCTTCGACTCTCGCCGTTGTGGACCAGTGCCCATCGAGTGCATCCGTGGTCTT GTCCTTGCATCCATTTGGCCCTCTCCTCACACCCTTCAGCGACCCCCACCGCCACCGCGG GCGTCGCAGCTTCACTGA
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  • Fasta :-

    MPWRQWWSAIRCSQYGDVPFVLLGVFIGWNSDVSCAVKGVSMVPTLHPGEYIVFVPYTML QVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRTQAEEWGKEHYVEVMPALYSPP AAQHTNGDDEDSTEIDSVANSERAYFDYVARNTVRSKDWDSCIDRIPNPSQWVWLEGDNK SESFDSRRCGPVPIECIRGLVLASIWPSPHTLQRPPPPPRASQLH

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LmjF.36.0200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India