LmjF.36.0320 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.0320OTHER0.9968040.0031070.000089
No Results

  • Fasta :-

    >LmjF.36.0320 MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEY VKRNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDNG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNSHFFVKAVTKNGVEVITAVH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/260 Sequence name : 260 Sequence length : 206 VALUES OF COMPUTED PARAMETERS Coef20 : 4.310 CoefTot : 0.141 ChDiff : -3 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.253 1.294 0.264 0.553 MesoH : -0.312 0.305 -0.206 0.257 MuHd_075 : 19.675 12.587 5.781 3.166 MuHd_095 : 6.064 8.600 4.051 1.855 MuHd_100 : 10.751 4.021 2.935 1.367 MuHd_105 : 19.583 4.176 3.531 2.327 Hmax_075 : 18.783 19.600 4.710 5.472 Hmax_095 : 6.700 13.038 1.858 3.964 Hmax_100 : 10.800 13.100 1.857 3.910 Hmax_105 : 11.725 10.000 1.431 3.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9302 0.0698 DFMC : 0.9197 0.0803
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 206 LmjF.36.0320 MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEYVKRNLMLNRMRQHGRHSSCD 80 STANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDNGAVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRP 160 DLTQQEGLELMQKCCDEVKRRVVISNSHFFVKAVTKNGVEVITAVH 240 ................................................................................ 80 ................................................................................ 160 .............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.0320 9 ETAIAFR|CQ 0.091 . LmjF.36.0320 28 NAFYYIK|IT 0.067 . LmjF.36.0320 35 ITDAEDK|IT 0.062 . LmjF.36.0320 54 TGENGPR|VN 0.080 . LmjF.36.0320 62 NFTEYVK|RN 0.052 . LmjF.36.0320 63 FTEYVKR|NL 0.151 . LmjF.36.0320 69 RNLMLNR|MR 0.109 . LmjF.36.0320 71 LMLNRMR|QH 0.084 . LmjF.36.0320 75 RMRQHGR|HS 0.118 . LmjF.36.0320 87 STANFMR|NC 0.098 . LmjF.36.0320 95 CLASAIR|SR 0.127 . LmjF.36.0320 97 ASAIRSR|EG 0.089 . LmjF.36.0320 159 LLDCLWR|PD 0.080 . LmjF.36.0320 173 GLELMQK|CC 0.065 . LmjF.36.0320 179 KCCDEVK|RR 0.056 . LmjF.36.0320 180 CCDEVKR|RV 0.211 . LmjF.36.0320 181 CDEVKRR|VV 0.184 . LmjF.36.0320 192 NSHFFVK|AV 0.122 . LmjF.36.0320 196 FVKAVTK|NG 0.061 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.0320 ATGGCGGAGACTGCAATTGCGTTCCGCTGCCAGGACTACGTCATGGTCGCTGCGGCCGGC CTCAACGCCTTCTACTACATCAAGATAACCGACGCGGAGGACAAGATTACGCAGCTTGAC ACACATCAGTTGGTCGCGTGCACTGGCGAGAACGGCCCTCGCGTGAACTTCACTGAATAC GTCAAGCGCAACCTCATGCTCAACCGCATGCGTCAGCACGGGCGCCACAGCAGCTGCGAT TCAACGGCGAACTTCATGCGCAACTGCCTCGCCAGTGCGATCCGCAGTCGCGAGGGGGCT TACCAGGTGAGCTGCCTCTTTGCCGGCTACGACATGCCGGTTTCCGAGGATGACAATGGT GCGGTGGGACCGCAGCTGTTTTACTTGGACTACCTCGGCACCCTGCAGGCTGTACCGTAT GGTTGCCACGGCTACGGCGCTTGCTTTGTGACTGCTCTGCTAGATTGCCTCTGGCGTCCT GATTTGACCCAACAGGAGGGCCTTGAGCTCATGCAGAAGTGCTGCGATGAGGTGAAGCGC CGCGTCGTCATCAGCAACTCACACTTCTTTGTGAAGGCGGTGACGAAGAACGGAGTAGAG GTCATCACGGCGGTGCACTAG
  • Download Fasta

  • Fasta :-

    MAETAIAFRCQDYVMVAAAGLNAFYYIKITDAEDKITQLDTHQLVACTGENGPRVNFTEY VKRNLMLNRMRQHGRHSSCDSTANFMRNCLASAIRSREGAYQVSCLFAGYDMPVSEDDNG AVGPQLFYLDYLGTLQAVPYGCHGYGACFVTALLDCLWRPDLTQQEGLELMQKCCDEVKR RVVISNSHFFVKAVTKNGVEVITAVH

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.36.032077 SHGRHSSCDS0.997unsp

LmjF.36.0320      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India