LmjF.36.1380 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005488      

  • Computed_GO_Functions:  binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.1380OTHER0.8204640.0342200.145317
No Results

  • Fasta :-

    >LmjF.36.1380 MTSTLTNSNRINIPAVCRLRERNTNKTVGSGVLVAQGLLLTSATAIPTQSRATHIVATFF EGTKKSAVDVQLQPQRYYFASRYPPEMDYCLISCEEAPLLNVTPVHMALTGKGWAPVEEG DVVLIVEHPIGDVAGTAAVPLDGKATFSSTLSATGDGDFDSVRAPYTEQKRFEEVLRCRG NVSFLKSNGSWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLP HLPQEDVTFEDVWDTWYVTNDITRILAILANFKGKSMAQQVTWRLCELTAKPQLVKSIAS NGGIEVILQNLSLFSSDEKLSESGLRALWNVSIGEEAHLATIIKKEGVQTILDVVESFPA NETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGFQQFRESVVLQKFALSFFATL ARLNEDFARDLVQQHVIEHITHLVEEKPKQIFLMEIVVGFVAELAQYPQTVELMCSNTPQ YAAASMSYLIDLLIHIILEYKDLDSLLVSGNRALWGLGNVPTCRGIILENPRGIDALRIS LPPLIASTHR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/29 Sequence name : 29 Sequence length : 550 VALUES OF COMPUTED PARAMETERS Coef20 : 4.920 CoefTot : -0.008 ChDiff : -10 ZoneTo : 60 KR : 6 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.518 1.818 0.224 0.653 MesoH : -0.098 0.685 -0.232 0.341 MuHd_075 : 33.483 23.024 9.568 7.250 MuHd_095 : 31.825 19.049 8.188 6.241 MuHd_100 : 29.839 17.980 8.084 6.286 MuHd_105 : 28.406 17.880 8.245 5.811 Hmax_075 : 15.167 13.767 3.226 5.635 Hmax_095 : -6.213 9.500 1.304 3.194 Hmax_100 : 14.600 16.700 3.032 5.450 Hmax_105 : 13.767 13.533 2.810 4.772 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2670 0.7330 DFMC : 0.1633 0.8367 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.0833 CMi = 0.44643 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 550 LmjF.36.1380 MTSTLTNSNRINIPAVCRLRERNTNKTVGSGVLVAQGLLLTSATAIPTQSRATHIVATFFEGTKKSAVDVQLQPQRYYFA 80 SRYPPEMDYCLISCEEAPLLNVTPVHMALTGKGWAPVEEGDVVLIVEHPIGDVAGTAAVPLDGKATFSSTLSATGDGDFD 160 SVRAPYTEQKRFEEVLRCRGNVSFLKSNGSWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLP 240 HLPQEDVTFEDVWDTWYVTNDITRILAILANFKGKSMAQQVTWRLCELTAKPQLVKSIASNGGIEVILQNLSLFSSDEKL 320 SESGLRALWNVSIGEEAHLATIIKKEGVQTILDVVESFPANETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGF 400 QQFRESVVLQKFALSFFATLARLNEDFARDLVQQHVIEHITHLVEEKPKQIFLMEIVVGFVAELAQYPQTVELMCSNTPQ 480 YAAASMSYLIDLLIHIILEYKDLDSLLVSGNRALWGLGNVPTCRGIILENPRGIDALRISLPPLIASTHR 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ...................................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.1380 10 TLTNSNR|IN 0.101 . LmjF.36.1380 18 NIPAVCR|LR 0.072 . LmjF.36.1380 20 PAVCRLR|ER 0.071 . LmjF.36.1380 22 VCRLRER|NT 0.091 . LmjF.36.1380 26 RERNTNK|TV 0.102 . LmjF.36.1380 51 AIPTQSR|AT 0.100 . LmjF.36.1380 64 TFFEGTK|KS 0.055 . LmjF.36.1380 65 FFEGTKK|SA 0.187 . LmjF.36.1380 76 VQLQPQR|YY 0.089 . LmjF.36.1380 82 RYYFASR|YP 0.085 . LmjF.36.1380 112 HMALTGK|GW 0.087 . LmjF.36.1380 144 AVPLDGK|AT 0.060 . LmjF.36.1380 163 GDFDSVR|AP 0.094 . LmjF.36.1380 170 APYTEQK|RF 0.074 . LmjF.36.1380 171 PYTEQKR|FE 0.132 . LmjF.36.1380 177 RFEEVLR|CR 0.089 . LmjF.36.1380 179 EEVLRCR|GN 0.080 . LmjF.36.1380 186 GNVSFLK|SN 0.091 . LmjF.36.1380 192 KSNGSWR|TA 0.146 . LmjF.36.1380 213 GLQSQSR|AD 0.115 . LmjF.36.1380 222 GEGVVNR|IL 0.099 . LmjF.36.1380 231 SLISIVK|HL 0.066 . LmjF.36.1380 264 VTNDITR|IL 0.080 . LmjF.36.1380 273 AILANFK|GK 0.064 . LmjF.36.1380 275 LANFKGK|SM 0.123 . LmjF.36.1380 284 AQQVTWR|LC 0.077 . LmjF.36.1380 291 LCELTAK|PQ 0.058 . LmjF.36.1380 296 AKPQLVK|SI 0.079 . LmjF.36.1380 319 LFSSDEK|LS 0.070 . LmjF.36.1380 326 LSESGLR|AL 0.089 . LmjF.36.1380 344 HLATIIK|KE 0.067 . LmjF.36.1380 345 LATIIKK|EG 0.084 . LmjF.36.1380 379 HNIAGCR|AA 0.082 . LmjF.36.1380 391 SEAHGAR|AL 0.134 . LmjF.36.1380 394 HGARALK|AL 0.210 . LmjF.36.1380 404 PGFQQFR|ES 0.075 . LmjF.36.1380 411 ESVVLQK|FA 0.071 . LmjF.36.1380 422 FFATLAR|LN 0.088 . LmjF.36.1380 429 LNEDFAR|DL 0.168 . LmjF.36.1380 447 THLVEEK|PK 0.066 . LmjF.36.1380 449 LVEEKPK|QI 0.074 . LmjF.36.1380 501 HIILEYK|DL 0.072 . LmjF.36.1380 512 LLVSGNR|AL 0.081 . LmjF.36.1380 524 GNVPTCR|GI 0.100 . LmjF.36.1380 532 IILENPR|GI 0.103 . LmjF.36.1380 538 RGIDALR|IS 0.076 . LmjF.36.1380 550 LIASTHR|-- 0.101 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.1380 ATGACGTCGACTCTGACGAACAGCAACCGCATCAACATCCCTGCGGTATGCCGGCTTCGT GAGCGGAACACAAACAAGACTGTGGGCTCCGGTGTGCTGGTGGCACAGGGGCTGCTGCTG ACGTCTGCCACCGCTATCCCTACGCAGTCGCGTGCCACGCACATTGTGGCCACGTTCTTT GAGGGCACCAAGAAGAGCGCCGTGGATGTGCAACTGCAGCCGCAGCGCTACTACTTCGCC TCCCGCTATCCGCCAGAAATGGACTACTGCCTCATCAGCTGCGAGGAGGCACCGCTGCTC AACGTCACGCCGGTGCACATGGCACTCACTGGGAAAGGGTGGGCACCTGTGGAGGAAGGC GATGTGGTGCTGATCGTAGAGCACCCGATCGGAGACGTGGCCGGCACCGCAGCAGTTCCA TTGGACGGAAAAGCAACCTTCTCCTCCACGCTATCCGCGACCGGCGATGGCGACTTTGAT TCCGTGCGGGCGCCGTACACGGAGCAGAAGCGCTTCGAGGAGGTGCTGCGCTGCCGCGGC AATGTGAGCTTCCTCAAGTCCAACGGCAGCTGGAGGACAGCTGGCTGTCCCGCGTTCAAC GAGCATGGCCAGCTGGTCGGCCTGCAATCGCAGAGCAGGGCAGATGGCGAGGGAGTCGTG AACCGCATCCTGTCACTGATCTCTATTGTGAAGCACCTCTTCGCCAACGTGCAGCTGCCA CATCTCCCGCAGGAGGACGTCACGTTCGAAGATGTGTGGGACACGTGGTACGTGACGAAC GACATCACGCGCATCCTCGCCATCCTCGCCAACTTCAAAGGCAAGTCCATGGCCCAGCAG GTGACATGGCGCCTGTGCGAGCTAACAGCAAAGCCGCAGCTGGTCAAGAGTATCGCCTCG AATGGCGGCATCGAGGTTATTCTCCAGAACCTTAGCCTCTTCTCTAGTGACGAGAAGCTT TCGGAGAGCGGCTTGCGCGCTCTCTGGAATGTGAGCATTGGCGAGGAGGCGCATCTAGCC ACCATTATCAAAAAGGAAGGCGTACAAACCATCCTCGACGTTGTAGAGTCATTTCCGGCG AACGAGACGGTGCTCGAGTTTGGCGCGGTGCTGCTGCACAACATCGCCGGGTGTCGTGCG GCGCCAAACTTCTCCGAGGCTCACGGCGCGCGTGCGCTGAAGGCGCTGTACCCTGGCTTT CAGCAGTTCCGTGAGAGCGTCGTGCTGCAGAAGTTTGCACTGAGCTTCTTTGCCACCCTT GCGCGACTGAACGAGGACTTTGCACGCGATTTGGTGCAACAGCATGTCATCGAGCACATT ACCCATCTTGTGGAGGAGAAGCCGAAGCAGATCTTTCTCATGGAGATAGTCGTCGGGTTT GTGGCAGAGCTGGCGCAGTACCCGCAGACGGTTGAGCTGATGTGTAGTAACACCCCACAG TACGCTGCCGCCAGCATGTCGTACCTGATTGACCTCCTCATTCATATCATCTTGGAATAC AAGGACCTTGACAGCCTTTTGGTGAGCGGCAATCGGGCGCTGTGGGGACTTGGTAATGTG CCCACCTGCCGCGGCATCATTTTGGAGAACCCACGGGGCATCGATGCACTGCGCATCTCA CTGCCACCACTCATAGCAAGCACCCACCGCTAG
  • Download Fasta

  • Fasta :-

    MTSTLTNSNRINIPAVCRLRERNTNKTVGSGVLVAQGLLLTSATAIPTQSRATHIVATFF EGTKKSAVDVQLQPQRYYFASRYPPEMDYCLISCEEAPLLNVTPVHMALTGKGWAPVEEG DVVLIVEHPIGDVAGTAAVPLDGKATFSSTLSATGDGDFDSVRAPYTEQKRFEEVLRCRG NVSFLKSNGSWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLP HLPQEDVTFEDVWDTWYVTNDITRILAILANFKGKSMAQQVTWRLCELTAKPQLVKSIAS NGGIEVILQNLSLFSSDEKLSESGLRALWNVSIGEEAHLATIIKKEGVQTILDVVESFPA NETVLEFGAVLLHNIAGCRAAPNFSEAHGARALKALYPGFQQFRESVVLQKFALSFFATL ARLNEDFARDLVQQHVIEHITHLVEEKPKQIFLMEIVVGFVAELAQYPQTVELMCSNTPQ YAAASMSYLIDLLIHIILEYKDLDSLLVSGNRALWGLGNVPTCRGIILENPRGIDALRIS LPPLIASTHR

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LmjF.36.1380      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India