LmjF.36.1600 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.1600OTHER0.9998850.0000280.000087
No Results

  • Fasta :-

    >LmjF.36.1600 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSAAVGVKGRDFVVLAALKRSPVAELSSY QEKVFEIDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRH IQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFERF TDCTLDELVTHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR PEDRVAAADEEEVLQEQPLDVEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/485 Sequence name : 485 Sequence length : 263 VALUES OF COMPUTED PARAMETERS Coef20 : 3.727 CoefTot : -0.247 ChDiff : -11 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.271 1.229 -0.115 0.440 MesoH : -1.050 0.208 -0.488 0.140 MuHd_075 : 30.200 14.818 7.934 5.959 MuHd_095 : 17.818 9.039 2.981 5.066 MuHd_100 : 18.566 9.173 3.486 5.440 MuHd_105 : 9.862 5.946 1.918 3.935 Hmax_075 : 1.575 -0.817 -1.938 1.902 Hmax_095 : 2.600 -0.350 -2.671 2.756 Hmax_100 : 1.000 0.500 -2.089 3.200 Hmax_105 : -2.217 -3.000 -3.744 1.633 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9205 0.0795 DFMC : 0.9409 0.0591
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 263 LmjF.36.1600 MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSAAVGVKGRDFVVLAALKRSPVAELSSYQEKVFEIDEHVGMSISGLVA 80 DGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRHIQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKAT 160 AMGVRSQASRTYLEKHFERFTDCTLDELVTHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR 240 PEDRVAAADEEEVLQEQPLDVEE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.1600 3 ----MFK|NE 0.062 . LmjF.36.1600 18 TWSPTGR|LF 0.114 . LmjF.36.1600 39 SAAVGVK|GR 0.070 . LmjF.36.1600 41 AVGVKGR|DF 0.103 . LmjF.36.1600 50 VVLAALK|RS 0.054 . LmjF.36.1600 51 VLAALKR|SP 0.246 . LmjF.36.1600 63 LSSYQEK|VF 0.084 . LmjF.36.1600 83 GLVADGR|VL 0.095 . LmjF.36.1600 87 DGRVLAR|FL 0.122 . LmjF.36.1600 90 VLARFLR|TE 0.197 . LmjF.36.1600 97 TECMNYR|YM 0.097 . LmjF.36.1600 116 ADMIGEK|HQ 0.065 . LmjF.36.1600 119 IGEKHQR|HI 0.104 . LmjF.36.1600 126 HIQFSGK|RP 0.067 . LmjF.36.1600 127 IQFSGKR|PF 0.186 . LmjF.36.1600 140 LLAGYDR|QG 0.075 . LmjF.36.1600 158 GDVYDYK|AT 0.080 . LmjF.36.1600 165 ATAMGVR|SQ 0.090 . LmjF.36.1600 170 VRSQASR|TY 0.102 . LmjF.36.1600 175 SRTYLEK|HF 0.072 . LmjF.36.1600 179 LEKHFER|FT 0.132 . LmjF.36.1600 194 LVTHALK|AL 0.057 . LmjF.36.1600 209 GVELNVK|NT 0.060 . LmjF.36.1600 218 TIAIVGK|DT 0.081 . LmjF.36.1600 231 FEEESAR|RY 0.094 . LmjF.36.1600 232 EEESARR|YL 0.132 . LmjF.36.1600 238 RYLDGFK|MR 0.053 . LmjF.36.1600 240 LDGFKMR|PE 0.109 . LmjF.36.1600 244 KMRPEDR|VA 0.109 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.1600 ATGTTCAAGAACGAGTACGATAGCGACATCACGACCTGGAGCCCGACGGGCCGGCTCTTT CAGATCGAGTATGCAAATGAGGCTGTCAACAACGGCTCCGCGGCCGTTGGCGTGAAAGGG AGGGACTTCGTCGTGCTCGCCGCACTCAAGCGCAGCCCCGTCGCGGAGCTGTCCTCGTAC CAAGAAAAAGTCTTCGAAATTGACGAGCATGTTGGCATGTCCATCTCGGGCCTCGTGGCG GACGGCCGCGTGCTTGCTCGCTTCCTGCGCACAGAATGCATGAACTACCGCTACATGTAT AGCCATGGTATGCCGATGAATCAAATGGCGGACATGATCGGCGAAAAGCACCAGCGCCAC ATCCAATTCAGTGGCAAGCGTCCTTTCGGCGTTGGCCTCCTGCTTGCTGGCTACGACCGT CAGGGACCACACCTGTACCAGACGGTGCCGTCCGGTGACGTCTACGACTACAAGGCCACG GCGATGGGCGTGCGCTCGCAGGCGTCGCGCACGTACTTGGAGAAGCATTTCGAGCGCTTC ACCGACTGCACCCTCGATGAGCTCGTGACGCACGCACTAAAGGCTCTCGCTTCCGCGACA TCGGAGGGCGTGGAGCTGAATGTGAAGAACACCACCATCGCCATCGTAGGCAAGGATACC CCCTTCACCATCTTTGAGGAGGAGAGCGCGCGCAGGTACCTGGATGGGTTCAAGATGCGT CCAGAAGACCGCGTGGCGGCGGCGGACGAGGAGGAGGTGCTGCAGGAGCAGCCTCTGGAC GTCGAGGAATAG
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  • Fasta :-

    MFKNEYDSDITTWSPTGRLFQIEYANEAVNNGSAAVGVKGRDFVVLAALKRSPVAELSSY QEKVFEIDEHVGMSISGLVADGRVLARFLRTECMNYRYMYSHGMPMNQMADMIGEKHQRH IQFSGKRPFGVGLLLAGYDRQGPHLYQTVPSGDVYDYKATAMGVRSQASRTYLEKHFERF TDCTLDELVTHALKALASATSEGVELNVKNTTIAIVGKDTPFTIFEEESARRYLDGFKMR PEDRVAAADEEEVLQEQPLDVEE

  • title: active site
  • coordinates: S33,L49,R51,K63,V164
No Results
No Results
IDSitePeptideScoreMethod
LmjF.36.1600124 SHIQFSGKRP0.995unsp

LmjF.36.1600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India