LmjF.36.1650 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.1650OTHER0.9991080.0007780.000114
No Results

  • Fasta :-

    >LmjF.36.1650 MFADFESVMLSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDA VTADPLDSSRYLHGENRCWTLTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRAS TGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGMECRLWELRNGSRITVAAASK ILANITYAYRNHGLSMGTMLAGWDEFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFP SQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/910 Sequence name : 910 Sequence length : 302 VALUES OF COMPUTED PARAMETERS Coef20 : 4.009 CoefTot : 0.141 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.859 1.124 0.078 0.476 MesoH : -0.488 0.340 -0.298 0.195 MuHd_075 : 20.139 12.814 6.151 3.205 MuHd_095 : 10.462 4.603 5.047 2.018 MuHd_100 : 6.325 3.496 4.084 1.618 MuHd_105 : 16.396 9.848 4.924 2.836 Hmax_075 : 20.183 15.750 2.172 5.402 Hmax_095 : 11.600 9.600 2.998 3.797 Hmax_100 : 3.900 7.600 0.745 3.200 Hmax_105 : 14.800 13.900 0.579 5.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9387 0.0613 DFMC : 0.9178 0.0822
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 302 LmjF.36.1650 MFADFESVMLSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDAVTADPLDSSRYLHGENRCWT 80 LTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRASTGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGM 160 ECRLWELRNGSRITVAAASKILANITYAYRNHGLSMGTMLAGWDEFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT 240 GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFPSQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.1650 20 TLDDCPR|VG 0.071 . LmjF.36.1650 44 LSLCSYR|RA 0.116 . LmjF.36.1650 45 SLCSYRR|AP 0.124 . LmjF.36.1650 53 PQQTTER|SP 0.091 . LmjF.36.1650 70 DPLDSSR|YL 0.109 . LmjF.36.1650 77 YLHGENR|CW 0.082 . LmjF.36.1650 89 ASCPVPR|AI 0.115 . LmjF.36.1650 93 VPRAIPK|ID 0.080 . LmjF.36.1650 97 IPKIDMK|KG 0.062 . LmjF.36.1650 98 PKIDMKK|GT 0.111 . LmjF.36.1650 106 TTTLAFR|FN 0.120 . LmjF.36.1650 118 IVAVDSR|AS 0.101 . LmjF.36.1650 132 ASQTVLK|VL 0.065 . LmjF.36.1650 156 DCQYWER|VL 0.092 . LmjF.36.1650 163 VLGMECR|LW 0.086 . LmjF.36.1650 168 CRLWELR|NG 0.084 . LmjF.36.1650 172 ELRNGSR|IT 0.078 . LmjF.36.1650 180 TVAAASK|IL 0.062 . LmjF.36.1650 190 NITYAYR|NH 0.081 . LmjF.36.1650 216 LYYVDDK|GS 0.071 . LmjF.36.1650 219 VDDKGSR|VK 0.069 . LmjF.36.1650 221 DKGSRVK|QD 0.060 . LmjF.36.1650 243 VLDTGYR|KD 0.071 . LmjF.36.1650 244 LDTGYRK|DL 0.087 . LmjF.36.1650 256 DACDLAR|RS 0.071 . LmjF.36.1650 257 ACDLARR|SI 0.191 . LmjF.36.1650 265 IFHATYR|DG 0.114 . LmjF.36.1650 281 VYHVHEK|GW 0.076 . LmjF.36.1650 285 HEKGWTK|IS 0.063 . LmjF.36.1650 288 GWTKISR|DD 0.118 . LmjF.36.1650 293 SRDDQTK|LY 0.077 . LmjF.36.1650 297 QTKLYDR|YF 0.079 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.1650 ATGTTCGCTGATTTCGAGTCCGTCATGTTGTCCAACTTCACGTTGGACGACTGCCCGAGG GTGGGTCCCTTTACGTACCACAACATGGATGAGGACACGCTGGAGGAACCGCTGTCGTTG TGCTCCTACCGACGCGCTCCACAGCAGACCACGGAACGATCTCCGGCTTCCTGTGATGCC GTGACGGCCGACCCGCTCGACTCCAGCCGCTACCTCCACGGCGAGAACCGCTGCTGGACG CTGACGGCGTCGTGCCCAGTGCCGCGAGCAATCCCAAAGATTGACATGAAGAAGGGTACG ACGACCCTCGCCTTCCGTTTCAACGGCGGCATCATCGTTGCCGTCGACTCGCGTGCGTCG ACGGGACAGTACATCGCTTCACAGACGGTGCTGAAGGTTCTGGAGATCAACGACTACCTA CTCGGTACGCTTGCTGGTGGTGCGGCCGATTGCCAGTACTGGGAGCGCGTGCTTGGTATG GAGTGCCGCCTGTGGGAGTTGCGCAACGGCAGCCGCATCACTGTCGCGGCGGCGAGCAAG ATTCTGGCGAACATCACGTACGCCTACCGCAACCACGGACTTTCGATGGGCACGATGCTG GCCGGCTGGGACGAGTTTGGCCCTTCGCTCTACTACGTGGACGACAAGGGCTCTCGCGTG AAGCAGGACCTCTTCAGTGTCGGCTCCGGCTCCATTTACGCTTACGGCGTGCTTGACACG GGCTACCGCAAGGACCTCTCCGTCGAGGATGCGTGCGACCTGGCACGCCGTTCCATCTTC CACGCGACGTACCGCGATGGCGCCTCGGGCGGTATCGTGACAGTGTACCACGTGCACGAG AAGGGCTGGACCAAGATCTCGCGCGATGACCAGACGAAGCTCTACGACCGCTACTTTCCG TCCCAGTAG
  • Download Fasta

  • Fasta :-

    MFADFESVMLSNFTLDDCPRVGPFTYHNMDEDTLEEPLSLCSYRRAPQQTTERSPASCDA VTADPLDSSRYLHGENRCWTLTASCPVPRAIPKIDMKKGTTTLAFRFNGGIIVAVDSRAS TGQYIASQTVLKVLEINDYLLGTLAGGAADCQYWERVLGMECRLWELRNGSRITVAAASK ILANITYAYRNHGLSMGTMLAGWDEFGPSLYYVDDKGSRVKQDLFSVGSGSIYAYGVLDT GYRKDLSVEDACDLARRSIFHATYRDGASGGIVTVYHVHEKGWTKISRDDQTKLYDRYFP SQ

  • title: active site
  • coordinates: T100,D116,R118,K132,S229,D266,S269,G270
No Results
No Results
IDSitePeptideScoreMethod
LmjF.36.1650247 SRKDLSVEDA0.998unsp

LmjF.36.1650      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India