LmjF.36.3990 | ATP-dependent protease subunit HslV, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.3990mTP0.0123420.0001550.987502CS pos: 30-31. VRK-GS. Pr: 0.3697
No Results

  • Fasta :-

    >LmjF.36.3990 MFRRLATRSTSLVTGAAVQARHTTILSVRKGSKVILIGDRQVTLGERIVAKSSACKLRKL NDNVVIGFAGSTADAFALMEKLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVC SKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALIDVDGYDAERIARKAMRIATD IDVFSNSNWDVEILTRDEEAVKKDEAENEAQGKE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/587 Sequence name : 587 Sequence length : 214 VALUES OF COMPUTED PARAMETERS Coef20 : 5.170 CoefTot : 0.805 ChDiff : -2 ZoneTo : 38 KR : 7 DE : 0 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.300 0.054 0.548 MesoH : -1.025 0.289 -0.430 0.115 MuHd_075 : 34.877 11.241 6.668 6.716 MuHd_095 : 36.194 22.696 9.744 8.537 MuHd_100 : 28.142 18.016 9.403 7.085 MuHd_105 : 32.258 17.956 8.299 7.596 Hmax_075 : 14.438 10.150 1.612 3.999 Hmax_095 : 15.700 17.400 2.118 5.560 Hmax_100 : 15.700 17.400 2.638 5.560 Hmax_105 : 11.900 11.800 0.712 4.118 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0130 0.9870 DFMC : 0.0113 0.9887 This protein is probably imported in mitochondria. f(Ser) = 0.1053 f(Arg) = 0.1316 CMi = 0.41408 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 214 LmjF.36.3990 MFRRLATRSTSLVTGAAVQARHTTILSVRKGSKVILIGDRQVTLGERIVAKSSACKLRKLNDNVVIGFAGSTADAFALME 80 KLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVCSKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALI 160 DVDGYDAERIARKAMRIATDIDVFSNSNWDVEILTRDEEAVKKDEAENEAQGKE 240 ................................................................................ 80 ................................................................................ 160 ...................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.3990 3 ----MFR|RL 0.078 . LmjF.36.3990 4 ---MFRR|LA 0.196 . LmjF.36.3990 8 FRRLATR|ST 0.178 . LmjF.36.3990 21 GAAVQAR|HT 0.134 . LmjF.36.3990 29 TTILSVR|KG 0.100 . LmjF.36.3990 30 TILSVRK|GS 0.088 . LmjF.36.3990 33 SVRKGSK|VI 0.068 . LmjF.36.3990 40 VILIGDR|QV 0.105 . LmjF.36.3990 47 QVTLGER|IV 0.079 . LmjF.36.3990 51 GERIVAK|SS 0.105 . LmjF.36.3990 56 AKSSACK|LR 0.060 . LmjF.36.3990 58 SSACKLR|KL 0.144 . LmjF.36.3990 59 SACKLRK|LN 0.095 . LmjF.36.3990 81 AFALMEK|LE 0.056 . LmjF.36.3990 85 MEKLENK|LN 0.060 . LmjF.36.3990 95 FPEQLSR|AA 0.085 . LmjF.36.3990 102 AAVELAK|DW 0.071 . LmjF.36.3990 105 ELAKDWR|TD 0.092 . LmjF.36.3990 108 KDWRTDR|AL 0.294 . LmjF.36.3990 111 RTDRALR|RL 0.228 . LmjF.36.3990 112 TDRALRR|LE 0.113 . LmjF.36.3990 122 SLIVCSK|EE 0.062 . LmjF.36.3990 153 SGGTYAK|AA 0.083 . LmjF.36.3990 157 YAKAAAR|AL 0.107 . LmjF.36.3990 169 DGYDAER|IA 0.089 . LmjF.36.3990 172 DAERIAR|KA 0.288 . LmjF.36.3990 173 AERIARK|AM 0.089 . LmjF.36.3990 176 IARKAMR|IA 0.150 . LmjF.36.3990 196 DVEILTR|DE 0.100 . LmjF.36.3990 202 RDEEAVK|KD 0.062 . LmjF.36.3990 203 DEEAVKK|DE 0.116 . LmjF.36.3990 213 ENEAQGK|E- 0.068 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.3990 ATGTTCCGTCGTCTTGCCACCCGCTCCACGTCCCTCGTGACGGGGGCCGCCGTGCAGGCG CGTCACACCACCATTCTTTCCGTGCGAAAAGGCAGCAAAGTAATCCTTATTGGGGACCGT CAGGTGACTTTGGGCGAGCGTATCGTGGCGAAGAGTAGCGCCTGCAAGCTGCGCAAGCTC AACGACAACGTTGTGATTGGCTTCGCCGGCAGCACGGCGGATGCTTTTGCGTTGATGGAA AAGCTGGAAAACAAGCTGAACGACTTTCCGGAGCAACTGTCTCGCGCTGCGGTGGAGCTG GCAAAGGACTGGCGCACCGACCGCGCCCTCCGCCGCCTCGAGGCATCCCTCATTGTGTGC AGCAAGGAAGAGACGTTGGAGATTGACGGGCAGGGCAACGTAATCACCCCGGAGGCTGAC GGCATCATCGCCATTGGCTCGGGTGGCACGTATGCCAAGGCGGCGGCTCGTGCGCTTATT GACGTTGACGGCTATGATGCGGAGCGCATCGCGCGCAAGGCGATGAGGATTGCAACCGAT ATCGATGTCTTCAGCAACAGCAACTGGGATGTGGAGATCTTGACGCGTGATGAAGAAGCG GTAAAGAAGGACGAGGCGGAGAATGAGGCGCAGGGCAAGGAATAG
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  • Fasta :-

    MFRRLATRSTSLVTGAAVQARHTTILSVRKGSKVILIGDRQVTLGERIVAKSSACKLRKL NDNVVIGFAGSTADAFALMEKLENKLNDFPEQLSRAAVELAKDWRTDRALRRLEASLIVC SKEETLEIDGQGNVITPEADGIIAIGSGGTYAKAAARALIDVDGYDAERIARKAMRIATD IDVFSNSNWDVEILTRDEEAVKKDEAENEAQGKE

    No Results
  • title: active site
  • coordinates: T23,D39,Q41,K56,S147
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LmjF.36.3990      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India