LmjF.36.4360 | Regulatory particle triple-A ATPase subunit 6

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.4360OTHER0.9980830.0000840.001833
No Results

  • Fasta :-

    >LmjF.36.4360 MLAAVAVPSSSSSTAPGTNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRH LKEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALR SGTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFE ALGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFV MAREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATN RMDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSG AELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/173 Sequence name : 173 Sequence length : 410 VALUES OF COMPUTED PARAMETERS Coef20 : 4.337 CoefTot : 0.609 ChDiff : 7 ZoneTo : 23 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.329 1.082 0.109 0.414 MesoH : -0.848 0.247 -0.427 0.163 MuHd_075 : 8.781 11.780 3.297 3.808 MuHd_095 : 9.250 12.506 3.244 2.622 MuHd_100 : 9.637 11.997 3.453 2.764 MuHd_105 : 9.179 7.704 2.884 2.144 Hmax_075 : 9.100 7.350 1.266 3.360 Hmax_095 : 10.850 8.225 1.620 3.185 Hmax_100 : 11.400 9.800 1.691 3.160 Hmax_105 : 9.800 5.483 1.130 2.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8489 0.1511 DFMC : 0.6518 0.3482
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 410 LmjF.36.4360 MLAAVAVPSSSSSTAPGTNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHLKEEVQMLQESGSLVVDVVR 80 VMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRSGTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSR 160 QVKEIKEVIELPVKHPKLFEALGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFV 240 MAREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNRMDILDEALLRPGRIDRKIE 320 FPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGAELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQD 400 KNVSLKKMWK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.4360 29 SDYFLQK|IH 0.064 . LmjF.36.4360 34 QKIHELR|AT 0.092 . LmjF.36.4360 38 ELRATQK|RT 0.066 . LmjF.36.4360 39 LRATQKR|TL 0.359 . LmjF.36.4360 46 TLDNFER|LE 0.075 . LmjF.36.4360 51 ERLEAQR|ND 0.067 . LmjF.36.4360 56 QRNDLNR|RV 0.145 . LmjF.36.4360 57 RNDLNRR|VR 0.109 . LmjF.36.4360 59 DLNRRVR|HL 0.347 . LmjF.36.4360 62 RRVRHLK|EE 0.157 . LmjF.36.4360 80 LVVDVVR|VM 0.085 . LmjF.36.4360 84 VVRVMGK|NK 0.059 . LmjF.36.4360 86 RVMGKNK|VL 0.070 . LmjF.36.4360 90 KNKVLVK|AG 0.081 . LmjF.36.4360 97 AGSGQGK|MV 0.118 . LmjF.36.4360 104 MVVDVDK|SV 0.114 . LmjF.36.4360 109 DKSVDFK|DL 0.096 . LmjF.36.4360 116 DLTPNAR|VA 0.090 . LmjF.36.4360 120 NARVALR|SG 0.135 . LmjF.36.4360 133 HYILPTK|VD 0.055 . LmjF.36.4360 142 PLVSLMK|VE 0.059 . LmjF.36.4360 145 SLMKVEK|AG 0.066 . LmjF.36.4360 148 KVEKAGK|ES 0.060 . LmjF.36.4360 160 EIGGLSR|QV 0.103 . LmjF.36.4360 163 GLSRQVK|EI 0.253 . LmjF.36.4360 166 RQVKEIK|EV 0.075 . LmjF.36.4360 174 VIELPVK|HP 0.053 . LmjF.36.4360 177 LPVKHPK|LF 0.077 . LmjF.36.4360 188 LGIEQPK|GV 0.077 . LmjF.36.4360 200 GPPGTGK|TL 0.059 . LmjF.36.4360 205 GKTLLAR|AV 0.134 . LmjF.36.4360 217 TDCTFIR|VS 0.150 . LmjF.36.4360 226 GAELVQK|YI 0.105 . LmjF.36.4360 233 YIGEGAR|MV 0.141 . LmjF.36.4360 236 EGARMVR|EL 0.208 . LmjF.36.4360 243 ELFVMAR|EH 0.105 . LmjF.36.4360 262 DSIGSSR|LE 0.091 . LmjF.36.4360 275 GDSEVQR|TM 0.128 . LmjF.36.4360 291 DGFEASK|NI 0.062 . LmjF.36.4360 294 EASKNIK|VI 0.073 . LmjF.36.4360 301 VIMATNR|MD 0.083 . LmjF.36.4360 311 LDEALLR|PG 0.075 . LmjF.36.4360 314 ALLRPGR|ID 0.208 . LmjF.36.4360 317 RPGRIDR|KI 0.282 . LmjF.36.4360 318 PGRIDRK|IE 0.078 . LmjF.36.4360 329 APDEAAR|FE 0.099 . LmjF.36.4360 334 ARFEILK|IH 0.068 . LmjF.36.4360 338 ILKIHSR|KM 0.074 . LmjF.36.4360 339 LKIHSRK|MN 0.097 . LmjF.36.4360 344 RKMNLTR|GI 0.123 . LmjF.36.4360 349 TRGIDLK|DI 0.096 . LmjF.36.4360 353 DLKDIAK|KT 0.064 . LmjF.36.4360 354 LKDIAKK|TS 0.100 . LmjF.36.4360 364 CSGAELK|AV 0.097 . LmjF.36.4360 376 AGMFALR|ER 0.084 . LmjF.36.4360 378 MFALRER|RV 0.119 . LmjF.36.4360 379 FALRERR|VH 0.322 . LmjF.36.4360 393 FVLAVAK|VM 0.061 . LmjF.36.4360 397 VAKVMHK|DQ 0.072 . LmjF.36.4360 401 MHKDQDK|NV 0.082 . LmjF.36.4360 406 DKNVSLK|KM 0.072 . LmjF.36.4360 407 KNVSLKK|MW 0.111 . LmjF.36.4360 410 SLKKMWK|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.4360 ATGCTCGCTGCCGTTGCCGTGCCGTCGTCGTCGTCGTCAACGGCGCCGGGGACCAACACC GCCGTCTCTGACTACTTTCTTCAGAAGATCCACGAGCTGCGCGCAACGCAGAAGCGAACC CTCGATAATTTCGAGCGCCTCGAAGCCCAGCGCAATGACCTTAACCGCCGTGTCCGCCAC CTCAAGGAGGAGGTGCAAATGCTGCAGGAATCCGGCTCCCTGGTCGTGGACGTTGTCAGA GTAATGGGCAAGAACAAGGTGTTGGTGAAGGCCGGTTCTGGGCAGGGAAAGATGGTGGTG GATGTGGACAAGTCGGTGGACTTCAAGGACTTGACCCCCAACGCCCGCGTCGCCCTGCGC AGCGGCACCTCAGCGATCCACTACATTCTGCCCACGAAGGTCGATCCGCTCGTGTCGCTC ATGAAGGTTGAGAAGGCTGGCAAGGAGTCGACCTATGACGAGATCGGCGGCCTATCGCGC CAGGTGAAGGAGATCAAGGAAGTGATCGAGCTCCCCGTGAAGCACCCAAAGCTGTTCGAG GCTCTTGGCATTGAGCAGCCGAAGGGTGTGCTTCTGTATGGCCCGCCTGGCACTGGAAAG ACGCTGCTTGCGCGTGCGGTGGCACACCACACCGACTGCACCTTTATCCGTGTCAGTGGC GCGGAGCTGGTGCAGAAGTACATCGGCGAGGGTGCTCGCATGGTGCGTGAGTTGTTCGTT ATGGCGCGTGAGCACAGCCCCTCCATCATTTTCATGGATGAAATCGACTCCATCGGCTCC TCGCGCTTGGAGTCAGGCGAGAACGGTGACAGTGAGGTGCAGCGTACCATGCTTGAGCTC CTGAACCAGCTGGATGGCTTTGAGGCCTCCAAAAACATCAAAGTGATTATGGCAACCAAC CGCATGGACATCCTTGACGAGGCGCTGCTGCGTCCTGGTCGCATTGACCGTAAGATCGAG TTTCCCGCCCCGGACGAAGCGGCCCGCTTTGAGATTCTAAAGATCCACTCGCGCAAGATG AATCTGACGCGCGGCATCGACCTCAAAGACATTGCCAAGAAAACGTCCAACTGCTCTGGC GCCGAGCTGAAGGCGGTGTGCACCGAGGCAGGCATGTTTGCTCTACGCGAGCGCCGCGTG CACATCACGCACGAGGACTTTGTGCTCGCTGTTGCCAAGGTGATGCACAAGGACCAGGAC AAGAACGTGTCGTTGAAGAAGATGTGGAAGTAG
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  • Fasta :-

    MLAAVAVPSSSSSTAPGTNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRH LKEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALR SGTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFE ALGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFV MAREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATN RMDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSG AELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK

  • title: ATP binding site
  • coordinates: P195,P196,G197,T198,G199,K200,T201,L202,D253,N300
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.36.4360246 SAREHSPSII0.991unspLmjF.36.4360246 SAREHSPSII0.991unspLmjF.36.4360246 SAREHSPSII0.991unspLmjF.36.4360265 SSRLESGENG0.997unspLmjF.36.4360150 SAGKESTYDE0.995unspLmjF.36.4360219 SFIRVSGAEL0.992unsp

LmjF.36.4360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India