LmjF.36.6260 | carboxypeptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004181      

  • Computed_GO_Functions:  metallocarboxypeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.36.6260OTHER0.9247870.0011360.074077
No Results

  • Fasta :-

    >LmjF.36.6260 MVRLHKLASQLLEELLRRKARLTTLAQQLWVKYRAENDVAAWLPTLQELVDLEREEGRLR AGTSGKSPYAALLGANEPGMTVAKLDTIYAEIKSRLPALYREVLENQKDVDASLTELQTP ISKEKQIALGRQLMTDVWRYDWGAGRYDEAPHPFGGMVKEDVRMTYYWSPDNYTKCLLAT IHETGHAKYEQNCGPRELLGQPVCEARSGGIHETQSLLAERMIAKSAAFAEYLTPLLKLH LGAQPGLTVENVRKLNQLVKPSYIRTLADEVGYSLHVILRYEIERDLIEGSLEAVDVPRV WNEKMKECMGLETLGRDDLGCLQDIHWAAGYWVGFPAYTIGAVTQCLLPPRPQARRAAAE WCSRLSSALQDTPQVPWRVLLPLRCAVLFAPLHRMLLRPQTSTLAASLALPFFSSLCSFR FFSRGVF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/333 Sequence name : 333 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.489 CoefTot : 0.369 ChDiff : 2 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.912 1.529 0.316 0.643 MesoH : -0.221 0.485 -0.231 0.191 MuHd_075 : 32.910 20.961 6.492 6.860 MuHd_095 : 55.149 31.635 14.128 11.377 MuHd_100 : 55.400 30.149 13.047 11.395 MuHd_105 : 42.240 23.529 9.653 8.728 Hmax_075 : -3.413 11.288 -2.097 1.873 Hmax_095 : 19.000 24.600 4.005 7.220 Hmax_100 : 13.200 15.700 0.706 5.260 Hmax_105 : 10.800 13.533 0.549 4.457 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1132 0.8868 DFMC : 0.2044 0.7956 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.0833 CMi = 0.44643 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 LmjF.36.6260 MVRLHKLASQLLEELLRRKARLTTLAQQLWVKYRAENDVAAWLPTLQELVDLEREEGRLRAGTSGKSPYAALLGANEPGM 80 TVAKLDTIYAEIKSRLPALYREVLENQKDVDASLTELQTPISKEKQIALGRQLMTDVWRYDWGAGRYDEAPHPFGGMVKE 160 DVRMTYYWSPDNYTKCLLATIHETGHAKYEQNCGPRELLGQPVCEARSGGIHETQSLLAERMIAKSAAFAEYLTPLLKLH 240 LGAQPGLTVENVRKLNQLVKPSYIRTLADEVGYSLHVILRYEIERDLIEGSLEAVDVPRVWNEKMKECMGLETLGRDDLG 320 CLQDIHWAAGYWVGFPAYTIGAVTQCLLPPRPQARRAAAEWCSRLSSALQDTPQVPWRVLLPLRCAVLFAPLHRMLLRPQ 400 TSTLAASLALPFFSSLCSFRFFSRGVF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.36.6260 3 ----MVR|LH 0.064 . LmjF.36.6260 6 -MVRLHK|LA 0.157 . LmjF.36.6260 17 LLEELLR|RK 0.066 . LmjF.36.6260 18 LEELLRR|KA 0.101 . LmjF.36.6260 19 EELLRRK|AR 0.066 . LmjF.36.6260 21 LLRRKAR|LT 0.377 . LmjF.36.6260 32 AQQLWVK|YR 0.060 . LmjF.36.6260 34 QLWVKYR|AE 0.124 . LmjF.36.6260 54 ELVDLER|EE 0.077 . LmjF.36.6260 58 LEREEGR|LR 0.071 . LmjF.36.6260 60 REEGRLR|AG 0.071 . LmjF.36.6260 66 RAGTSGK|SP 0.099 . LmjF.36.6260 84 PGMTVAK|LD 0.061 . LmjF.36.6260 93 TIYAEIK|SR 0.076 . LmjF.36.6260 95 YAEIKSR|LP 0.075 . LmjF.36.6260 101 RLPALYR|EV 0.108 . LmjF.36.6260 108 EVLENQK|DV 0.081 . LmjF.36.6260 123 LQTPISK|EK 0.058 . LmjF.36.6260 125 TPISKEK|QI 0.079 . LmjF.36.6260 131 KQIALGR|QL 0.084 . LmjF.36.6260 139 LMTDVWR|YD 0.098 . LmjF.36.6260 146 YDWGAGR|YD 0.087 . LmjF.36.6260 159 PFGGMVK|ED 0.054 . LmjF.36.6260 163 MVKEDVR|MT 0.076 . LmjF.36.6260 175 SPDNYTK|CL 0.067 . LmjF.36.6260 188 HETGHAK|YE 0.069 . LmjF.36.6260 196 EQNCGPR|EL 0.092 . LmjF.36.6260 207 QPVCEAR|SG 0.233 . LmjF.36.6260 221 QSLLAER|MI 0.087 . LmjF.36.6260 225 AERMIAK|SA 0.102 . LmjF.36.6260 238 YLTPLLK|LH 0.057 . LmjF.36.6260 253 LTVENVR|KL 0.081 . LmjF.36.6260 254 TVENVRK|LN 0.083 . LmjF.36.6260 260 KLNQLVK|PS 0.062 . LmjF.36.6260 265 VKPSYIR|TL 0.080 . LmjF.36.6260 280 SLHVILR|YE 0.086 . LmjF.36.6260 285 LRYEIER|DL 0.110 . LmjF.36.6260 299 EAVDVPR|VW 0.092 . LmjF.36.6260 304 PRVWNEK|MK 0.067 . LmjF.36.6260 306 VWNEKMK|EC 0.079 . LmjF.36.6260 316 GLETLGR|DD 0.105 . LmjF.36.6260 351 QCLLPPR|PQ 0.070 . LmjF.36.6260 355 PPRPQAR|RA 0.150 . LmjF.36.6260 356 PRPQARR|AA 0.145 . LmjF.36.6260 364 AAEWCSR|LS 0.094 . LmjF.36.6260 378 TPQVPWR|VL 0.114 . LmjF.36.6260 384 RVLLPLR|CA 0.069 . LmjF.36.6260 394 LFAPLHR|ML 0.089 . LmjF.36.6260 398 LHRMLLR|PQ 0.093 . LmjF.36.6260 420 SSLCSFR|FF 0.141 . LmjF.36.6260 424 SFRFFSR|GV 0.155 . ____________________________^_________________

  • Fasta :-

    >LmjF.36.6260 ATGGTGCGTCTGCACAAACTTGCGTCGCAGCTGCTGGAGGAGCTGCTGCGGCGCAAGGCG CGGCTGACAACGCTGGCACAGCAGCTGTGGGTGAAATACCGCGCGGAAAACGACGTTGCT GCGTGGCTGCCGACGCTGCAGGAGCTGGTGGACCTCGAGCGCGAGGAGGGCCGCCTTCGA GCCGGCACGAGCGGGAAGTCCCCGTACGCCGCACTGCTCGGTGCCAACGAGCCCGGGATG ACGGTTGCGAAGCTGGACACAATCTACGCGGAAATCAAGTCGCGGCTGCCGGCGCTGTAC AGGGAGGTGCTGGAGAACCAAAAGGACGTGGACGCGAGCCTCACTGAGCTGCAGACGCCG ATCTCGAAGGAGAAGCAGATTGCGCTTGGCCGGCAGCTGATGACGGACGTGTGGAGGTAC GACTGGGGCGCCGGCCGCTACGACGAGGCACCGCACCCGTTTGGTGGGATGGTGAAGGAG GACGTGCGGATGACGTACTACTGGTCGCCGGACAACTACACCAAGTGCCTCCTGGCGACG ATCCACGAGACAGGACACGCCAAGTATGAGCAGAACTGCGGGCCGCGCGAGCTGCTTGGG CAGCCGGTGTGCGAGGCGCGATCCGGCGGCATCCACGAGACGCAGTCGCTGCTGGCGGAG AGGATGATAGCCAAGTCCGCTGCGTTCGCCGAGTACCTGACGCCGCTGCTGAAGCTGCAC CTTGGCGCGCAGCCAGGGCTCACGGTGGAGAACGTGCGCAAGCTCAACCAGCTGGTGAAG CCAAGCTACATCCGAACGCTCGCGGACGAGGTGGGTTACTCTCTCCACGTGATCCTGCGC TACGAGATCGAGCGCGACCTGATCGAGGGGAGCCTGGAGGCGGTGGACGTGCCGCGGGTG TGGAACGAAAAGATGAAGGAGTGCATGGGCCTGGAGACGCTTGGGCGTGACGACCTCGGT TGCCTACAGGACATCCACTGGGCTGCCGGCTACTGGGTGGGCTTTCCCGCCTACACGATC GGCGCCGTCACCCAGTGCCTCCTTCCTCCCCGCCCCCAAGCTCGACGAGCTGCTGCTGAG TGGTGCTCGCGGCTTTCCTCTGCTCTGCAGGACACGCCACAAGTTCCCTGGCGTGTTCTG CTGCCTTTGCGCTGCGCTGTGCTGTTTGCACCGCTTCATCGCATGCTCCTCCGACCGCAG ACTTCAACGCTTGCGGCTTCTCTTGCGCTTCCGTTTTTTTCCTCTTTGTGTTCGTTTCGC TTCTTTTCGCGCGGTGTTTTTTAG
  • Download Fasta

  • Fasta :-

    MVRLHKLASQLLEELLRRKARLTTLAQQLWVKYRAENDVAAWLPTLQELVDLEREEGRLR AGTSGKSPYAALLGANEPGMTVAKLDTIYAEIKSRLPALYREVLENQKDVDASLTELQTP ISKEKQIALGRQLMTDVWRYDWGAGRYDEAPHPFGGMVKEDVRMTYYWSPDNYTKCLLAT IHETGHAKYEQNCGPRELLGQPVCEARSGGIHETQSLLAERMIAKSAAFAEYLTPLLKLH LGAQPGLTVENVRKLNQLVKPSYIRTLADEVGYSLHVILRYEIERDLIEGSLEAVDVPRV WNEKMKECMGLETLGRDDLGCLQDIHWAAGYWVGFPAYTIGAVTQCLLPPRPQARRAAAE WCSRLSSALQDTPQVPWRVLLPLRCAVLFAPLHRMLLRPQTSTLAASLALPFFSSLCSFR FFSRGVF

  • title: Zn binding site
  • coordinates: H182,H186,E213
No Results
No Results
IDSitePeptideScoreMethod
LmjF.36.626067 STSGKSPYAA0.993unsp

LmjF.36.6260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India