LmxM.03.0540 | serine peptidase, Clan SJ, family S16, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.03.0540OTHER0.9999430.0000190.000038
No Results

  • Fasta :-

    >LmxM.03.0540 MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIG HYVGEVLKRVDEERFIVKSISGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPRE VDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFMRVGIAPPKGVLLY GPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGR LDRKIEIPLPNESGRLDILRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFA IRAGRDYVENNDFNKAVRKVADMKRLEGTAHQYSDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/364 Sequence name : 364 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 3.480 CoefTot : -0.289 ChDiff : 4 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.612 1.471 -0.041 0.486 MesoH : -0.436 0.569 -0.311 0.281 MuHd_075 : 20.790 12.611 6.346 4.763 MuHd_095 : 22.380 9.397 4.782 5.168 MuHd_100 : 19.139 8.268 4.157 4.176 MuHd_105 : 18.243 8.941 3.720 3.827 Hmax_075 : 3.033 4.783 -1.184 2.683 Hmax_095 : -9.537 -3.937 -5.207 0.464 Hmax_100 : -7.900 -1.000 -4.137 1.380 Hmax_105 : -7.900 0.700 -4.137 1.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9452 0.0548 DFMC : 0.9519 0.0481
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 LmxM.03.0540 MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIGHYVGEVLKRVDEERFIVKSI 80 SGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPREVDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPL 160 TNPELFMRVGIAPPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID 240 EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGRLDRKIEIPLPNESGRLDILR 320 IHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFAIRAGRDYVENNDFNKAVRKVADMKRLEGTAHQYSDQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.03.0540 11 APFDPER|EA 0.100 . LmxM.03.0540 15 PEREALR|NE 0.073 . LmxM.03.0540 20 LRNEAIK|KT 0.070 . LmxM.03.0540 21 RNEAIKK|TV 0.177 . LmxM.03.0540 25 IKKTVER|NV 0.159 . LmxM.03.0540 31 RNVTQAR|LK 0.089 . LmxM.03.0540 33 VTQARLK|KV 0.073 . LmxM.03.0540 34 TQARLKK|VN 0.389 . LmxM.03.0540 40 KVNDDVK|LQ 0.062 . LmxM.03.0540 44 DVKLQQR|EL 0.130 . LmxM.03.0540 48 QQRELDK|VE 0.063 . LmxM.03.0540 68 YVGEVLK|RV 0.071 . LmxM.03.0540 69 VGEVLKR|VD 0.145 . LmxM.03.0540 74 KRVDEER|FI 0.153 . LmxM.03.0540 78 EERFIVK|SI 0.114 . LmxM.03.0540 84 KSISGAR|HL 0.099 . LmxM.03.0540 90 RHLVGYR|KS 0.074 . LmxM.03.0540 91 HLVGYRK|SI 0.116 . LmxM.03.0540 94 GYRKSIK|PE 0.060 . LmxM.03.0540 97 KSIKPEK|LK 0.069 . LmxM.03.0540 99 IKPEKLK|FG 0.063 . LmxM.03.0540 103 KLKFGAR|VA 0.095 . LmxM.03.0540 115 TTFTIVK|VL 0.059 . LmxM.03.0540 119 IVKVLPR|EV 0.192 . LmxM.03.0540 135 QYMSSDK|DV 0.095 . LmxM.03.0540 150 GLQPQMR|QM 0.121 . LmxM.03.0540 153 PQMRQMR|EV 0.400 . LmxM.03.0540 168 NPELFMR|VG 0.080 . LmxM.03.0540 175 VGIAPPK|GV 0.072 . LmxM.03.0540 187 GPPGTGK|TL 0.061 . LmxM.03.0540 192 GKTLLAK|AI 0.072 . LmxM.03.0540 204 VDAAFLK|IV 0.080 . LmxM.03.0540 213 ASSIVDK|YI 0.120 . LmxM.03.0540 220 YIGESAR|VI 0.103 . LmxM.03.0540 223 ESARVIR|EM 0.325 . LmxM.03.0540 230 EMFAYAR|EH 0.086 . LmxM.03.0540 248 VDAIGSK|RI 0.060 . LmxM.03.0540 249 DAIGSKR|IE 0.163 . LmxM.03.0540 257 EGSSSDR|EI 0.102 . LmxM.03.0540 261 SDREIQR|TL 0.116 . LmxM.03.0540 275 QMDGFDK|LG 0.057 . LmxM.03.0540 278 GFDKLGK|VK 0.054 . LmxM.03.0540 280 DKLGKVK|VI 0.062 . LmxM.03.0540 287 VIMATNR|PD 0.072 . LmxM.03.0540 297 LDAALMR|PG 0.081 . LmxM.03.0540 300 ALMRPGR|LD 0.260 . LmxM.03.0540 303 RPGRLDR|KI 0.352 . LmxM.03.0540 304 PGRLDRK|IE 0.069 . LmxM.03.0540 315 LPNESGR|LD 0.102 . LmxM.03.0540 320 GRLDILR|IH 0.108 . LmxM.03.0540 325 LRIHSAK|IT 0.093 . LmxM.03.0540 328 HSAKITK|KG 0.069 . LmxM.03.0540 329 SAKITKK|GD 0.136 . LmxM.03.0540 339 DFESVVK|LS 0.056 . LmxM.03.0540 350 FNGADLR|NV 0.140 . LmxM.03.0540 362 AGMFAIR|AG 0.088 . LmxM.03.0540 365 FAIRAGR|DY 0.243 . LmxM.03.0540 375 ENNDFNK|AV 0.107 . LmxM.03.0540 378 DFNKAVR|KV 0.114 . LmxM.03.0540 379 FNKAVRK|VA 0.113 . LmxM.03.0540 384 RKVADMK|RL 0.071 . LmxM.03.0540 385 KVADMKR|LE 0.187 . ____________________________^_________________

  • Fasta :-

    >LmxM.03.0540 ATGCAGAGCAACGCCCCCTTCGACCCGGAGCGCGAGGCGCTGCGCAACGAAGCCATCAAG AAGACCGTGGAGCGCAACGTCACGCAGGCTCGCTTGAAGAAGGTGAACGACGACGTCAAG CTCCAGCAGCGGGAGCTGGACAAGGTGGAGGATCAAGTCAACGCCCTCCTCAGCATTGGC CATTACGTGGGGGAGGTGCTCAAGCGCGTTGATGAGGAGCGCTTCATCGTGAAGAGCATC AGCGGTGCGCGCCACCTCGTCGGCTACCGCAAGAGCATCAAGCCGGAGAAGCTCAAGTTC GGCGCTCGTGTCGCGCTAGAAATTACCACCTTCACGATCGTGAAGGTGCTGCCGCGCGAG GTGGACCCGCAGGTGTACAGCATGCAGTACATGTCCAGTGACAAGGACGTGTCCTTCCAA GACATTGGTGGGCTGCAGCCGCAGATGCGTCAGATGCGTGAGGTGATCGAGCTGCCCCTG ACGAACCCGGAGCTGTTCATGCGCGTCGGCATCGCGCCGCCGAAGGGCGTGCTGCTGTAC GGGCCCCCCGGCACCGGCAAGACGCTGCTGGCGAAGGCCATCGCCGCCAACGTGGATGCC GCGTTCCTCAAGATCGTCGCCTCCTCTATTGTGGACAAGTACATTGGCGAGTCCGCCCGC GTCATCCGCGAGATGTTCGCCTACGCGCGTGAGCATGAGCCGTGCATCATCTTCATCGAT GAGGTGGATGCCATTGGCAGCAAGCGCATCGAGGGCTCGTCCTCCGATCGCGAAATACAG CGCACGCTTATGGAGCTGCTCAACCAGATGGACGGCTTTGACAAGCTAGGCAAGGTGAAG GTGATCATGGCGACGAACCGCCCCGACACGCTCGATGCGGCGCTGATGCGGCCCGGCCGC CTCGACCGCAAGATTGAGATCCCGTTGCCGAACGAGTCGGGGCGACTCGACATTCTCCGC ATCCACTCGGCGAAGATAACGAAAAAGGGCGACATCGACTTCGAGAGCGTCGTGAAGCTG TCGGAGGGCTTCAACGGTGCCGATCTGCGCAACGTGTGCACGGAGGCCGGCATGTTCGCC ATCCGCGCCGGCCGCGACTACGTCGAGAACAACGACTTCAACAAGGCCGTCCGCAAGGTG GCTGACATGAAGCGGCTGGAGGGGACGGCGCACCAGTACTCGGACCAGTAG
  • Download Fasta

  • Fasta :-

    MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIG HYVGEVLKRVDEERFIVKSISGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPRE VDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFMRVGIAPPKGVLLY GPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGR LDRKIEIPLPNESGRLDILRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFA IRAGRDYVENNDFNKAVRKVADMKRLEGTAHQYSDQ

  • title: ATP binding site
  • coordinates: P182,P183,G184,T185,G186,K187,T188,L189,D240,N286
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.03.0540255 SEGSSSDREI0.995unspLmxM.03.0540323 SLRIHSAKIT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India