LmxM.06.0140 | proteasome beta 6 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.06.0140OTHER0.9995300.0001820.000288
No Results

  • Fasta :-

    >LmxM.06.0140 MIEDHAEYGHNHYPQKLASSTLTLPQQGAKQQQWSPYQDNGGTTAAIAGKGFVILAGDTR LNGDYCLHCRHDQSKIFQLTPYTYMASNGMQADRVQLQQMLKYRVKWYQYNNGGKVPPTK AIAQLMSTMLYHRRFFPYYTFNMIVGLDEEGNGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/655 Sequence name : 655 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 2.587 CoefTot : 0.000 ChDiff : -2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.194 1.159 0.142 0.558 MesoH : -0.481 0.131 -0.328 0.200 MuHd_075 : 6.007 5.954 3.127 1.992 MuHd_095 : 31.577 20.254 8.588 6.442 MuHd_100 : 19.409 13.874 5.570 4.089 MuHd_105 : 11.012 5.371 2.187 1.293 Hmax_075 : -6.183 -1.838 -3.615 1.540 Hmax_095 : 5.425 4.725 -0.646 3.675 Hmax_100 : -3.400 1.700 -2.996 2.720 Hmax_105 : -3.300 -2.917 -4.869 1.130 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9668 0.0332 DFMC : 0.9812 0.0188
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 LmxM.06.0140 MIEDHAEYGHNHYPQKLASSTLTLPQQGAKQQQWSPYQDNGGTTAAIAGKGFVILAGDTRLNGDYCLHCRHDQSKIFQLT 80 PYTYMASNGMQADRVQLQQMLKYRVKWYQYNNGGKVPPTKAIAQLMSTMLYHRRFFPYYTFNMIVGLDEEGNGVCYSYDA 160 VGSTEPFLYGTRGSAASFLEPVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE 240 SFELRKD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.06.0140 16 HNHYPQK|LA 0.084 . LmxM.06.0140 30 LPQQGAK|QQ 0.068 . LmxM.06.0140 50 TAAIAGK|GF 0.067 . LmxM.06.0140 60 ILAGDTR|LN 0.092 . LmxM.06.0140 70 DYCLHCR|HD 0.086 . LmxM.06.0140 75 CRHDQSK|IF 0.071 . LmxM.06.0140 94 NGMQADR|VQ 0.076 . LmxM.06.0140 102 QLQQMLK|YR 0.057 . LmxM.06.0140 104 QQMLKYR|VK 0.096 . LmxM.06.0140 106 MLKYRVK|WY 0.067 . LmxM.06.0140 115 QYNNGGK|VP 0.057 . LmxM.06.0140 120 GKVPPTK|AI 0.086 . LmxM.06.0140 133 STMLYHR|RF 0.075 . LmxM.06.0140 134 TMLYHRR|FF 0.147 . LmxM.06.0140 172 PFLYGTR|GS 0.071 . LmxM.06.0140 189 LDCLINR|QH 0.086 . LmxM.06.0140 202 APPEMTK|EE 0.057 . LmxM.06.0140 210 ETLAMLK|NA 0.058 . LmxM.06.0140 219 FTGAAER|DI 0.112 . LmxM.06.0140 234 SFFIITK|DG 0.062 . LmxM.06.0140 239 TKDGVQR|ES 0.096 . LmxM.06.0140 245 RESFELR|KD 0.103 . LmxM.06.0140 246 ESFELRK|D- 0.091 . ____________________________^_________________

  • Fasta :-

    >LmxM.06.0140 ATGATCGAGGACCACGCCGAGTACGGGCACAACCACTACCCCCAGAAGCTGGCTAGCTCT ACCCTCACCCTGCCGCAGCAGGGGGCGAAGCAGCAGCAGTGGAGCCCCTACCAGGACAAT GGCGGCACGACGGCTGCTATCGCTGGCAAAGGCTTCGTCATCCTCGCTGGTGACACTCGC CTGAACGGCGACTACTGCCTTCACTGCCGACATGATCAGAGCAAGATCTTCCAGCTGACG CCTTACACGTACATGGCGAGCAACGGCATGCAGGCCGACCGGGTGCAGCTCCAGCAGATG CTCAAGTACCGCGTCAAGTGGTACCAGTACAACAACGGCGGTAAGGTGCCGCCGACCAAG GCGATTGCACAACTCATGTCCACGATGCTGTACCACCGTCGCTTCTTCCCGTACTACACG TTCAATATGATCGTTGGTCTGGATGAGGAGGGGAACGGCGTGTGCTACAGCTACGACGCC GTCGGCTCAACGGAGCCCTTCCTGTACGGCACCCGGGGTAGCGCGGCCAGCTTCTTGGAG CCGGTGCTCGACTGCCTCATCAACCGCCAACATATGACCGCCCAGGCGCCGCCGGAGATG ACGAAGGAGGAGACGCTGGCGATGCTGAAGAACGCCTTCACCGGCGCAGCCGAGCGCGAC ATTTACACGGGCGACTCTGTCTCCTTCTTCATCATCACGAAGGACGGCGTGCAGCGGGAG AGCTTCGAGCTGCGCAAGGACTGA
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  • Fasta :-

    MIEDHAEYGHNHYPQKLASSTLTLPQQGAKQQQWSPYQDNGGTTAAIAGKGFVILAGDTR LNGDYCLHCRHDQSKIFQLTPYTYMASNGMQADRVQLQQMLKYRVKWYQYNNGGKVPPTK AIAQLMSTMLYHRRFFPYYTFNMIVGLDEEGNGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD

  • title: active site
  • coordinates: G42,D58,R60,K75,S174,D220,T223,G224
No Results
No Results
IDSitePeptideScoreMethod
LmxM.06.0140201 TPPEMTKEET0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India