LmxM.08.1040c | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.08.1040cSP0.0009420.9959390.003118CS pos: 27-28. ARA-IH. Pr: 0.7165
No Results

  • Fasta :-

    >LmxM.08.1040c MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLA NFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKAR ADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVS CDDMNDGCSGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGE VPYWVIKNSWGGDWGEQGYVRVVMGVNACLLS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/337 Sequence name : 337 Sequence length : 332 VALUES OF COMPUTED PARAMETERS Coef20 : 5.343 CoefTot : 1.727 ChDiff : -9 ZoneTo : 38 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.865 0.714 0.759 MesoH : 0.031 0.586 -0.232 0.334 MuHd_075 : 16.737 13.196 3.648 4.906 MuHd_095 : 16.461 10.037 4.080 5.297 MuHd_100 : 17.241 11.708 3.756 5.418 MuHd_105 : 20.755 13.213 4.996 5.617 Hmax_075 : 15.200 22.800 3.606 5.780 Hmax_095 : 13.563 18.637 6.211 5.845 Hmax_100 : 14.100 19.100 2.670 6.060 Hmax_105 : 13.100 15.983 4.493 5.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7561 0.2439 DFMC : 0.7835 0.2165
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 332 LmxM.08.1040c MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQ 80 FGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIE 160 GQWYLAGHELVSLSEQQLVSCDDMNDGCSGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG 240 HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYV 320 RVVMGVNACLLS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08.1040c 5 --MATSR|AA 0.098 . LmxM.08.1040c 26 AACAPAR|AI 0.134 . LmxM.08.1040c 42 ALFEEFK|RT 0.058 . LmxM.08.1040c 43 LFEEFKR|TY 0.204 . LmxM.08.1040c 47 FKRTYGR|AY 0.111 . LmxM.08.1040c 58 LAEEQQR|LA 0.099 . LmxM.08.1040c 64 RLANFER|NL 0.115 . LmxM.08.1040c 70 RNLELMR|EH 0.074 . LmxM.08.1040c 75 MREHQAR|NP 0.196 . LmxM.08.1040c 85 AQFGITK|FF 0.074 . LmxM.08.1040c 97 EAEFAAR|YL 0.095 . LmxM.08.1040c 109 AYFAAAK|RH 0.055 . LmxM.08.1040c 110 YFAAAKR|HA 0.225 . LmxM.08.1040c 117 HAAQHYR|KA 0.141 . LmxM.08.1040c 118 AAQHYRK|AR 0.077 . LmxM.08.1040c 120 QHYRKAR|AD 0.316 . LmxM.08.1040c 133 PDAVDWR|EK 0.136 . LmxM.08.1040c 135 AVDWREK|GA 0.064 . LmxM.08.1040c 142 GAVTPVK|DQ 0.098 . LmxM.08.1040c 249 LIGSSEK|AM 0.063 . LmxM.08.1040c 257 MAAWLAK|NG 0.062 . LmxM.08.1040c 274 SSFMSYK|SG 0.068 . LmxM.08.1040c 284 LTACIGK|QL 0.067 . LmxM.08.1040c 307 VPYWVIK|NS 0.070 . LmxM.08.1040c 321 GEQGYVR|VV 0.124 . ____________________________^_________________

  • Fasta :-

    >LmxM.08.1040c ATGGCGACGTCGAGGGCCGCTCTCTGCGCTGTTGCGGTTGTGTGCGTGGTGCTTGCGGCT GCCTGCGCACCCGCGCGCGCGATACACGTGGGCACGCCGGCTGCTGCGCTGTTCGAGGAG TTCAAGCGGACGTACGGGCGCGCGTACGAGACGCTGGCGGAGGAGCAGCAGCGGCTGGCG AACTTCGAGCGCAACCTGGAGCTGATGCGCGAGCACCAGGCGCGGAACCCCCACGCGCAG TTCGGGATCACGAAGTTCTTCGACCTGTCGGAGGCGGAGTTCGCCGCGCGCTACCTGAAC GGCGCCGCGTACTTCGCAGCGGCGAAGCGGCACGCCGCCCAGCACTACCGCAAGGCGCGC GCGGACCTGTCGGCGGTGCCTGATGCGGTGGACTGGCGCGAGAAGGGCGCCGTGACGCCG GTGAAGGATCAGGGTGCGTGCGGGTCGTGCTGGGCGTTCTCGGCGGTCGGCAACATCGAG GGGCAGTGGTACCTTGCCGGCCACGAGCTGGTGAGCCTGTCGGAGCAGCAGCTGGTGAGC TGCGATGACATGAACGATGGCTGCAGCGGCGGGCTGATGCTGCAGGCGTTCGACTGGCTG CTGCAAAACACGAACGGGCACCTGCACACGGAGGACAGCTACCCCTACGTGTCCGGCAAC GGCTATGTGCCCGAGTGCTCGAACAGCAGTGAGCTCGTTGTCGGTGCGCAGATCGACGGC CACGTGTTGATCGGAAGCAGCGAAAAGGCGATGGCTGCGTGGCTCGCGAAGAATGGCCCC ATCGCGATTGCGCTGGACGCCAGCTCCTTCATGTCCTACAAGAGCGGCGTGCTGACCGCG TGCATTGGTAAACAGCTGAACCACGGTGTGCTGCTCGTCGGGTACGACATGACTGGTGAG GTTCCGTACTGGGTGATCAAGAACTCGTGGGGTGGGGACTGGGGCGAGCAGGGCTACGTG CGCGTGGTGATGGGGGTGAACGCGTGCCTGCTCAGT
  • Download Fasta

  • Fasta :-

    MATSRAALCAVAVVCVVLAAACAPARAIHVGTPAAALFEEFKRTYGRAYETLAEEQQRLA NFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKAR ADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVS CDDMNDGCSGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDG HVLIGSSEKAMAAWLAKNGPIAIALDASSFMSYKSGVLTACIGKQLNHGVLLVGYDMTGE VPYWVIKNSWGGDWGEQGYVRVVMGVNACLLS

    No Results
  • title: active site
  • coordinates: Q144,C150,H288,N308
No Results
No Results
IDSitePeptideScoreMethod
LmxM.08.1040c272 SSSFMSYKSG0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India