LmxM.08_29.0910 | signal peptide peptidase, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.0910OTHER0.9999890.0000010.000010
No Results

  • Fasta :-

    >LmxM.08_29.0910 MMKGKSDIALQTDEALSMPLNGSVMLFSLYVSLRFIPKEYFNILISFYLSLISVFAFHMF IKGYIKPNILTGLICVGTGCGSFFAQNWIASNILAFSIAVTALERLPVNGFTTSFILLIG LFFYDIFWVFGSDVMLIVATGIDGPIKLVFPQTIFGDCSKKSLLGLGDIIVPGLFICQTL VFSKDYVKRGSLYFVTSMVAYTLSLVNTMAVMLIFQHGQPALLFIVPWLLVTFSAVALYN GDVKAAWNFDILSVFTTSSEKPAPDEPHAEQEESLSTFVCEAVLDLFGFAKEAAAECKTA EELKEKKEA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/329 Sequence name : 329 Sequence length : 309 VALUES OF COMPUTED PARAMETERS Coef20 : 3.634 CoefTot : -0.364 ChDiff : -7 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.294 2.429 0.529 0.925 MesoH : 1.111 1.341 0.096 0.564 MuHd_075 : 12.963 5.406 2.396 1.305 MuHd_095 : 18.216 10.743 5.474 3.255 MuHd_100 : 23.789 13.527 6.051 3.958 MuHd_105 : 24.714 13.088 5.391 3.637 Hmax_075 : -1.137 2.217 -3.100 1.750 Hmax_095 : 9.000 7.400 0.260 3.340 Hmax_100 : 9.600 9.300 -0.227 2.880 Hmax_105 : 5.500 9.200 -0.815 2.830 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9539 0.0461 DFMC : 0.9371 0.0629
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 309 LmxM.08_29.0910 MMKGKSDIALQTDEALSMPLNGSVMLFSLYVSLRFIPKEYFNILISFYLSLISVFAFHMFIKGYIKPNILTGLICVGTGC 80 GSFFAQNWIASNILAFSIAVTALERLPVNGFTTSFILLIGLFFYDIFWVFGSDVMLIVATGIDGPIKLVFPQTIFGDCSK 160 KSLLGLGDIIVPGLFICQTLVFSKDYVKRGSLYFVTSMVAYTLSLVNTMAVMLIFQHGQPALLFIVPWLLVTFSAVALYN 240 GDVKAAWNFDILSVFTTSSEKPAPDEPHAEQEESLSTFVCEAVLDLFGFAKEAAAECKTAEELKEKKEA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.0910 3 ----MMK|GK 0.079 . LmxM.08_29.0910 5 --MMKGK|SD 0.103 . LmxM.08_29.0910 34 SLYVSLR|FI 0.126 . LmxM.08_29.0910 38 SLRFIPK|EY 0.076 . LmxM.08_29.0910 62 AFHMFIK|GY 0.069 . LmxM.08_29.0910 66 FIKGYIK|PN 0.056 . LmxM.08_29.0910 105 AVTALER|LP 0.069 . LmxM.08_29.0910 147 GIDGPIK|LV 0.075 . LmxM.08_29.0910 160 IFGDCSK|KS 0.061 . LmxM.08_29.0910 161 FGDCSKK|SL 0.128 . LmxM.08_29.0910 184 QTLVFSK|DY 0.064 . LmxM.08_29.0910 188 FSKDYVK|RG 0.057 . LmxM.08_29.0910 189 SKDYVKR|GS 0.203 . LmxM.08_29.0910 244 LYNGDVK|AA 0.064 . LmxM.08_29.0910 261 FTTSSEK|PA 0.062 . LmxM.08_29.0910 291 DLFGFAK|EA 0.079 . LmxM.08_29.0910 298 EAAAECK|TA 0.076 . LmxM.08_29.0910 304 KTAEELK|EK 0.062 . LmxM.08_29.0910 306 AEELKEK|KE 0.060 . LmxM.08_29.0910 307 EELKEKK|EA 0.100 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.0910 ATGATGAAAGGGAAATCTGACATTGCACTCCAAACGGACGAGGCGCTGTCAATGCCTTTG AATGGCTCCGTCATGTTGTTTTCGTTGTACGTTTCCTTGCGCTTTATTCCGAAGGAATAC TTTAACATCCTGATTTCCTTCTATCTTAGCTTGATTAGTGTCTTCGCTTTTCACATGTTC ATAAAAGGGTATATCAAGCCCAATATTCTCACCGGACTGATCTGCGTAGGAACCGGGTGC GGCAGCTTTTTTGCTCAGAACTGGATCGCAAGTAACATACTGGCCTTTTCAATCGCCGTC ACAGCGCTTGAAAGGCTGCCTGTGAATGGGTTCACGACCTCTTTCATTCTGCTGATTGGC CTCTTCTTCTACGACATCTTCTGGGTATTTGGGTCGGACGTCATGCTGATCGTGGCGACC GGCATTGACGGACCAATAAAGCTCGTGTTTCCTCAGACGATCTTTGGCGACTGCTCCAAG AAAAGCCTCCTGGGACTCGGCGACATCATTGTGCCTGGCCTTTTTATATGCCAAACACTG GTGTTCTCGAAGGACTACGTGAAGAGGGGAAGTCTGTACTTTGTCACCTCGATGGTCGCG TACACCCTGAGTCTTGTGAACACTATGGCTGTCATGCTGATCTTCCAACATGGCCAGCCG GCACTCCTGTTCATTGTACCATGGCTTCTCGTCACATTCTCTGCTGTCGCCTTGTACAAC GGGGATGTCAAGGCGGCATGGAACTTTGATATTCTTAGCGTCTTCACAACTTCTTCAGAG AAGCCAGCGCCTGATGAGCCGCATGCAGAACAGGAGGAATCCCTCTCCACGTTTGTCTGC GAGGCTGTTTTGGATCTTTTCGGGTTCGCAAAGGAGGCGGCGGCGGAGTGCAAGACGGCG GAGGAGTTGAAGGAAAAGAAGGAGGCGTAG
  • Download Fasta

  • Fasta :-

    MMKGKSDIALQTDEALSMPLNGSVMLFSLYVSLRFIPKEYFNILISFYLSLISVFAFHMF IKGYIKPNILTGLICVGTGCGSFFAQNWIASNILAFSIAVTALERLPVNGFTTSFILLIG LFFYDIFWVFGSDVMLIVATGIDGPIKLVFPQTIFGDCSKKSLLGLGDIIVPGLFICQTL VFSKDYVKRGSLYFVTSMVAYTLSLVNTMAVMLIFQHGQPALLFIVPWLLVTFSAVALYN GDVKAAWNFDILSVFTTSSEKPAPDEPHAEQEESLSTFVCEAVLDLFGFAKEAAAECKTA EELKEKKEA

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India