LmxM.08_29.1570 | metallo-peptidase, Clan MH, Family M18

_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.1570OTHER0.9963950.0014520.002153
No Results

  • Fasta :-

    >LmxM.08_29.1570 MSYPATLREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATL PGENGVMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLTMNRAKPVHYAFSFDEEVGCTGVPYLIEYLKERGFQADACLIGEPTDMNVYVGSKG LTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC MTTGLIKGGNAVNTVPAQCEFVITVRITDNDTSDAIERHVRAYVNDHVLPAMREEYPDAE VKVMRALNMPAFNGKEAASVTQKALMLRKATKTYKTGGGTEGGYFEDVLGVSTVIVGPGP HAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/291 Sequence name : 291 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.349 CoefTot : 0.100 ChDiff : -8 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.453 1.429 0.137 0.578 MesoH : -0.462 0.281 -0.343 0.223 MuHd_075 : 44.673 20.908 10.342 7.187 MuHd_095 : 10.745 11.042 4.692 4.307 MuHd_100 : 9.758 12.034 3.536 4.363 MuHd_105 : 13.481 13.829 3.224 4.507 Hmax_075 : 16.683 12.950 1.619 5.623 Hmax_095 : 4.375 10.900 0.048 5.170 Hmax_100 : 4.400 10.200 0.048 4.970 Hmax_105 : 13.400 11.700 0.932 5.990 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7401 0.2599 DFMC : 0.7680 0.2320
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 LmxM.08_29.1570 MSYPATLREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATLPGENGVMQGGIVLSGHTDVV 80 PVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALTPQFLTMNRAKPVHYAFSFDEEVGCTGVPYLIEYLKERGFQ 160 ADACLIGEPTDMNVYVGSKGLTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC 240 MTTGLIKGGNAVNTVPAQCEFVITVRITDNDTSDAIERHVRAYVNDHVLPAMREEYPDAEVKVMRALNMPAFNGKEAASV 320 TQKALMLRKATKTYKTGGGTEGGYFEDVLGVSTVIVGPGPHAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGN 400 L 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.1570 8 SYPATLR|EW 0.082 . LmxM.08_29.1570 13 LREWLAK|II 0.084 . LmxM.08_29.1570 22 SFDTTSR|NS 0.065 . LmxM.08_29.1570 33 PMVEYVR|DY 0.086 . LmxM.08_29.1570 37 YVRDYLK|SV 0.114 . LmxM.08_29.1570 51 FVYNPEK|TH 0.056 . LmxM.08_29.1570 86 VPVDGQK|WD 0.067 . LmxM.08_29.1570 97 PFTMVEK|DG 0.061 . LmxM.08_29.1570 100 MVEKDGK|LF 0.073 . LmxM.08_29.1570 104 DGKLFGR|GA 0.138 . LmxM.08_29.1570 110 RGACDMK|GF 0.069 . LmxM.08_29.1570 128 QFLTMNR|AK 0.067 . LmxM.08_29.1570 130 LTMNRAK|PV 0.097 . LmxM.08_29.1570 155 YLIEYLK|ER 0.060 . LmxM.08_29.1570 157 IEYLKER|GF 0.087 . LmxM.08_29.1570 179 NVYVGSK|GL 0.061 . LmxM.08_29.1570 191 SVSVQGK|AI 0.101 . LmxM.08_29.1570 216 AAQIITK|VR 0.066 . LmxM.08_29.1570 218 QIITKVR|EI 0.089 . LmxM.08_29.1570 225 EIAVDLR|KN 0.099 . LmxM.08_29.1570 226 IAVDLRK|NG 0.069 . LmxM.08_29.1570 229 DLRKNGR|QD 0.079 . LmxM.08_29.1570 247 MTTGLIK|GG 0.064 . LmxM.08_29.1570 266 EFVITVR|IT 0.076 . LmxM.08_29.1570 278 TSDAIER|HV 0.151 . LmxM.08_29.1570 281 AIERHVR|AY 0.164 . LmxM.08_29.1570 293 HVLPAMR|EE 0.068 . LmxM.08_29.1570 302 YPDAEVK|VM 0.057 . LmxM.08_29.1570 305 AEVKVMR|AL 0.096 . LmxM.08_29.1570 315 MPAFNGK|EA 0.076 . LmxM.08_29.1570 323 AASVTQK|AL 0.069 . LmxM.08_29.1570 328 QKALMLR|KA 0.111 . LmxM.08_29.1570 329 KALMLRK|AT 0.083 . LmxM.08_29.1570 332 MLRKATK|TY 0.086 . LmxM.08_29.1570 335 KATKTYK|TG 0.071 . LmxM.08_29.1570 378 LVDQMEK|ST 0.068 . LmxM.08_29.1570 388 FTMALVR|LY 0.065 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.1570 ATGTCCTACCCGGCGACGCTCCGCGAGTGGCTGGCAAAGATCATCAGCTTCGACACGACG AGTCGCAACTCGAACTTGCCGATGGTGGAGTACGTGCGCGACTACCTGAAGTCCGTCGGC GTTGCGTCGACGTTCGTGTACAACCCGGAGAAGACGCACGCCAACCTGTGGGCGACGCTG CCCGGCGAGAACGGCGTGATGCAGGGCGGCATCGTGCTTTCAGGTCACACGGACGTTGTG CCGGTGGATGGGCAGAAATGGGACAGCGACCCGTTCACGATGGTGGAGAAGGACGGCAAG CTGTTTGGCCGCGGAGCCTGCGACATGAAAGGCTTCCTGGCCGTTGTGCTTGCGCTGACG CCGCAGTTCCTGACGATGAATCGGGCGAAGCCCGTGCACTACGCTTTCTCATTCGACGAG GAGGTGGGCTGCACCGGCGTGCCGTACTTGATCGAATATCTGAAGGAGCGCGGGTTCCAG GCGGATGCCTGCCTGATCGGTGAACCAACGGACATGAACGTTTACGTCGGTTCTAAGGGG TTGACTCAGTGGAGCGTATCTGTGCAGGGAAAGGCGATTCACTCGTCTATGGCGCTCATG AACACAAGCTGCAACGCGATCGAGTACGCTGCGCAGATCATCACAAAGGTGCGCGAGATC GCGGTGGACTTGCGCAAGAACGGCCGCCAGGACCCTGAATACGCATGCCCGTTCCCCTGC ATGACGACTGGGTTGATCAAGGGCGGCAATGCTGTGAACACGGTCCCTGCGCAGTGCGAG TTTGTGATCACTGTGCGCATCACAGACAACGACACATCGGACGCCATCGAGCGGCATGTG CGTGCGTATGTGAACGATCACGTGCTGCCTGCGATGCGTGAGGAGTACCCCGATGCTGAG GTAAAGGTGATGCGTGCGTTGAACATGCCTGCCTTTAACGGCAAAGAGGCTGCTTCTGTG ACGCAGAAGGCCTTGATGCTCCGAAAGGCTACAAAGACGTACAAGACGGGTGGTGGCACG GAGGGCGGCTACTTTGAGGATGTCCTGGGTGTTTCAACGGTGATTGTGGGTCCGGGTCCT CACGCGATGGCGCATCTGCCGAACGAGTACGTGCTCGTGGACCAGATGGAAAAAAGCACA GAGTTCACGATGGCCCTGGTGCGTCTGTACACGGACCCGAGCTACTGCGGTGCCGGCAAC CTGTAA
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  • Fasta :-

    MSYPATLREWLAKIISFDTTSRNSNLPMVEYVRDYLKSVGVASTFVYNPEKTHANLWATL PGENGVMQGGIVLSGHTDVVPVDGQKWDSDPFTMVEKDGKLFGRGACDMKGFLAVVLALT PQFLTMNRAKPVHYAFSFDEEVGCTGVPYLIEYLKERGFQADACLIGEPTDMNVYVGSKG LTQWSVSVQGKAIHSSMALMNTSCNAIEYAAQIITKVREIAVDLRKNGRQDPEYACPFPC MTTGLIKGGNAVNTVPAQCEFVITVRITDNDTSDAIERHVRAYVNDHVLPAMREEYPDAE VKVMRALNMPAFNGKEAASVTQKALMLRKATKTYKTGGGTEGGYFEDVLGVSTVIVGPGP HAMAHLPNEYVLVDQMEKSTEFTMALVRLYTDPSYCGAGNL

  • title: metal binding site
  • coordinates: H76,D108,E140,E141,E168,H365
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India