LmxM.08_29.2360 | aspartyl aminopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.08_29.2360OTHER0.9991870.0002220.000591
No Results

  • Fasta :-

    >LmxM.08_29.2360 MSTIMSEHVVKMAKEFVNFMNQAITPFHAVQTVSDMLRDAGYTQLHEEKAWPEITPGGKY YLTRNGTSIIAFSVGGKFDPMNGVKIVGAHTDSPNFLVKPRTKSTAADYQRVAVQCYGGG LWHSWFDRDLTVAGRVIISRERLEQKIIKIDKPIMRIPNLAIHLTAAKDREAFSFNKESH LIPIISTQIAAKIAECDDKDASNLNHCVSLMKAIASVAGCNPDDIVDFDLSVIDTQPAVI GGIHDEFIFSPRLDNLISCYCAVKAIIEAGSLENDTMIRMVCLFDHEECGSSSSQGAAGS LVPDVIEHIVSNKTLRATLVANSFLLSVDGAHGCHPNYADKHENAHRPALHGGPVIKYNA NVRYATNGLTAAVVKDMAKKADVPIQEFVVRNDFPCGSTIGPILSALSGIKTADIGNPMI SMHSIREMCGTVDVYYMTKLIESFFVNYENPHE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/247 Sequence name : 247 Sequence length : 453 VALUES OF COMPUTED PARAMETERS Coef20 : 4.162 CoefTot : 0.224 ChDiff : -9 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.635 1.471 0.341 0.565 MesoH : -0.405 0.648 -0.236 0.278 MuHd_075 : 3.021 5.299 1.157 1.107 MuHd_095 : 45.197 27.370 11.920 8.249 MuHd_100 : 42.231 22.654 11.975 6.796 MuHd_105 : 34.931 17.850 11.256 5.205 Hmax_075 : 4.100 8.633 -1.580 2.990 Hmax_095 : 18.637 15.662 2.156 5.220 Hmax_100 : 18.700 15.600 2.619 4.760 Hmax_105 : 16.683 15.700 2.655 4.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5932 0.4068 DFMC : 0.6436 0.3564
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 453 LmxM.08_29.2360 MSTIMSEHVVKMAKEFVNFMNQAITPFHAVQTVSDMLRDAGYTQLHEEKAWPEITPGGKYYLTRNGTSIIAFSVGGKFDP 80 MNGVKIVGAHTDSPNFLVKPRTKSTAADYQRVAVQCYGGGLWHSWFDRDLTVAGRVIISRERLEQKIIKIDKPIMRIPNL 160 AIHLTAAKDREAFSFNKESHLIPIISTQIAAKIAECDDKDASNLNHCVSLMKAIASVAGCNPDDIVDFDLSVIDTQPAVI 240 GGIHDEFIFSPRLDNLISCYCAVKAIIEAGSLENDTMIRMVCLFDHEECGSSSSQGAAGSLVPDVIEHIVSNKTLRATLV 320 ANSFLLSVDGAHGCHPNYADKHENAHRPALHGGPVIKYNANVRYATNGLTAAVVKDMAKKADVPIQEFVVRNDFPCGSTI 400 GPILSALSGIKTADIGNPMISMHSIREMCGTVDVYYMTKLIESFFVNYENPHE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.08_29.2360 11 MSEHVVK|MA 0.078 . LmxM.08_29.2360 14 HVVKMAK|EF 0.062 . LmxM.08_29.2360 38 TVSDMLR|DA 0.201 . LmxM.08_29.2360 49 TQLHEEK|AW 0.070 . LmxM.08_29.2360 59 EITPGGK|YY 0.060 . LmxM.08_29.2360 64 GKYYLTR|NG 0.102 . LmxM.08_29.2360 77 AFSVGGK|FD 0.065 . LmxM.08_29.2360 85 DPMNGVK|IV 0.096 . LmxM.08_29.2360 99 SPNFLVK|PR 0.075 . LmxM.08_29.2360 101 NFLVKPR|TK 0.106 . LmxM.08_29.2360 103 LVKPRTK|ST 0.077 . LmxM.08_29.2360 111 TAADYQR|VA 0.108 . LmxM.08_29.2360 128 WHSWFDR|DL 0.188 . LmxM.08_29.2360 135 DLTVAGR|VI 0.077 . LmxM.08_29.2360 140 GRVIISR|ER 0.077 . LmxM.08_29.2360 142 VIISRER|LE 0.070 . LmxM.08_29.2360 146 RERLEQK|II 0.068 . LmxM.08_29.2360 149 LEQKIIK|ID 0.067 . LmxM.08_29.2360 152 KIIKIDK|PI 0.070 . LmxM.08_29.2360 156 IDKPIMR|IP 0.091 . LmxM.08_29.2360 168 IHLTAAK|DR 0.064 . LmxM.08_29.2360 170 LTAAKDR|EA 0.116 . LmxM.08_29.2360 177 EAFSFNK|ES 0.058 . LmxM.08_29.2360 192 STQIAAK|IA 0.074 . LmxM.08_29.2360 199 IAECDDK|DA 0.093 . LmxM.08_29.2360 212 HCVSLMK|AI 0.064 . LmxM.08_29.2360 252 EFIFSPR|LD 0.071 . LmxM.08_29.2360 264 SCYCAVK|AI 0.069 . LmxM.08_29.2360 279 ENDTMIR|MV 0.097 . LmxM.08_29.2360 313 EHIVSNK|TL 0.069 . LmxM.08_29.2360 316 VSNKTLR|AT 0.099 . LmxM.08_29.2360 341 HPNYADK|HE 0.075 . LmxM.08_29.2360 347 KHENAHR|PA 0.124 . LmxM.08_29.2360 357 HGGPVIK|YN 0.077 . LmxM.08_29.2360 363 KYNANVR|YA 0.143 . LmxM.08_29.2360 375 LTAAVVK|DM 0.075 . LmxM.08_29.2360 379 VVKDMAK|KA 0.069 . LmxM.08_29.2360 380 VKDMAKK|AD 0.097 . LmxM.08_29.2360 391 IQEFVVR|ND 0.112 . LmxM.08_29.2360 411 SALSGIK|TA 0.074 . LmxM.08_29.2360 426 ISMHSIR|EM 0.114 . LmxM.08_29.2360 439 DVYYMTK|LI 0.063 . ____________________________^_________________

  • Fasta :-

    >LmxM.08_29.2360 ATGTCGACCATTATGTCTGAGCACGTTGTAAAGATGGCAAAGGAATTTGTCAACTTTATG AATCAAGCCATCACCCCGTTTCACGCTGTGCAAACAGTTTCCGACATGCTGAGGGATGCC GGGTACACGCAGCTTCATGAGGAAAAGGCTTGGCCAGAAATAACTCCTGGCGGCAAGTAC TACTTGACGCGCAATGGGACCAGCATCATTGCGTTTTCAGTCGGAGGAAAATTTGACCCA ATGAACGGTGTAAAGATTGTTGGCGCGCACACGGATTCCCCTAATTTTCTGGTGAAGCCA CGCACAAAATCGACCGCCGCTGATTACCAACGCGTGGCAGTGCAGTGCTACGGTGGTGGT CTGTGGCACTCCTGGTTTGATCGCGATTTGACGGTTGCCGGCCGCGTTATCATTTCGCGA GAGCGCCTGGAGCAGAAAATTATAAAGATCGACAAGCCAATCATGCGTATCCCAAATCTC GCTATTCATTTGACCGCTGCCAAGGATCGCGAAGCGTTTTCATTCAACAAGGAGTCTCAT TTGATCCCTATCATATCTACGCAGATAGCCGCGAAGATTGCAGAGTGTGACGACAAGGAT GCATCGAATCTGAATCACTGCGTTTCCCTGATGAAGGCTATTGCGAGCGTTGCTGGATGC AACCCAGATGATATTGTCGATTTTGATTTGAGCGTGATTGACACCCAGCCGGCGGTAATT GGAGGAATTCATGATGAGTTTATCTTCTCGCCGCGCCTTGACAATCTGATCTCGTGCTAT TGCGCTGTGAAGGCGATTATCGAGGCGGGCTCATTGGAAAATGATACGATGATACGCATG GTGTGCTTGTTCGATCACGAAGAGTGTGGCTCCAGTTCATCCCAGGGTGCTGCCGGCTCG CTCGTTCCTGATGTTATTGAGCACATTGTAAGCAACAAAACCCTTCGTGCAACGTTGGTC GCCAACTCATTTCTTCTGTCCGTCGATGGCGCACATGGGTGTCACCCGAATTACGCTGAC AAGCACGAAAATGCTCACCGACCAGCTCTCCATGGAGGACCTGTTATCAAATACAATGCA AACGTCCGTTATGCGACCAACGGGTTAACAGCAGCCGTAGTGAAGGATATGGCGAAGAAG GCTGACGTACCCATCCAAGAGTTTGTGGTGCGAAATGACTTTCCCTGCGGATCCACCATC GGGCCCATTCTGTCTGCTCTGTCCGGTATAAAAACTGCTGATATTGGCAACCCCATGATC AGCATGCACAGTATCCGGGAGATGTGCGGTACTGTTGATGTCTACTACATGACGAAGCTG ATTGAATCCTTTTTCGTCAACTACGAAAACCCGCATGAGTAG
  • Download Fasta

  • Fasta :-

    MSTIMSEHVVKMAKEFVNFMNQAITPFHAVQTVSDMLRDAGYTQLHEEKAWPEITPGGKY YLTRNGTSIIAFSVGGKFDPMNGVKIVGAHTDSPNFLVKPRTKSTAADYQRVAVQCYGGG LWHSWFDRDLTVAGRVIISRERLEQKIIKIDKPIMRIPNLAIHLTAAKDREAFSFNKESH LIPIISTQIAAKIAECDDKDASNLNHCVSLMKAIASVAGCNPDDIVDFDLSVIDTQPAVI GGIHDEFIFSPRLDNLISCYCAVKAIIEAGSLENDTMIRMVCLFDHEECGSSSSQGAAGS LVPDVIEHIVSNKTLRATLVANSFLLSVDGAHGCHPNYADKHENAHRPALHGGPVIKYNA NVRYATNGLTAAVVKDMAKKADVPIQEFVVRNDFPCGSTIGPILSALSGIKTADIGNPMI SMHSIREMCGTVDVYYMTKLIESFFVNYENPHE

  • title: metal binding site
  • coordinates: H90,D254,E287,E288,D329,H423
No Results
No Results
IDSitePeptideScoreMethod
LmxM.08_29.2360424 SISMHSIREM0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India