LmxM.09.0600 | cyclin 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008236      

  • Computed_GO_Functions:  serine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.09.0600OTHER0.9899230.0057190.004357
No Results

  • Fasta :-

    >LmxM.09.0600 MGAPHLNSIRACLAGSGHDAFSEPATIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTE QTSLLLQRGWTVRPIQLADPAVKTVNDSDAHFIRTAADIVLVSGGNTLYAVRRWEETGLA QLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMDLVPQDQISKT EAELADLSTSWSYIRVHGLNILPGMMCPHFDVTQGNGVRREEDFAKMLKRHPTERGVGLD HWALLILKGDGTYETAALPGKTRASTPPDTSPTATVPGVFVLDVVDGAIQQRCVPTTGQL SDLLREPAGPVVLDPFERFHAMENPTSSSGSLMQR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/336 Sequence name : 336 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 3.490 CoefTot : -0.589 ChDiff : -8 ZoneTo : 18 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.759 1.465 0.324 0.610 MesoH : -0.369 0.294 -0.323 0.195 MuHd_075 : 11.039 3.456 4.146 2.038 MuHd_095 : 17.333 10.259 5.214 2.915 MuHd_100 : 17.259 12.293 5.639 3.063 MuHd_105 : 15.287 12.897 5.762 2.980 Hmax_075 : 6.650 6.300 0.914 3.280 Hmax_095 : 10.237 8.050 1.680 4.043 Hmax_100 : 9.900 10.200 1.875 3.980 Hmax_105 : 14.350 15.633 4.741 5.273 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9774 0.0226 DFMC : 0.9594 0.0406
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 LmxM.09.0600 MGAPHLNSIRACLAGSGHDAFSEPATIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTEQTSLLLQRGWTVRPIQLADP 80 AVKTVNDSDAHFIRTAADIVLVSGGNTLYAVRRWEETGLAQLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQP 160 SLKRAALKMDLVPQDQISKTEAELADLSTSWSYIRVHGLNILPGMMCPHFDVTQGNGVRREEDFAKMLKRHPTERGVGLD 240 HWALLILKGDGTYETAALPGKTRASTPPDTSPTATVPGVFVLDVVDGAIQQRCVPTTGQLSDLLREPAGPVVLDPFERFH 320 AMENPTSSSGSLMQR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.09.0600 10 PHLNSIR|AC 0.078 . LmxM.09.0600 38 SLVATPK|TG 0.061 . LmxM.09.0600 68 TSLLLQR|GW 0.099 . LmxM.09.0600 73 QRGWTVR|PI 0.110 . LmxM.09.0600 83 LADPAVK|TV 0.078 . LmxM.09.0600 94 SDAHFIR|TA 0.151 . LmxM.09.0600 112 NTLYAVR|RW 0.075 . LmxM.09.0600 113 TLYAVRR|WE 0.248 . LmxM.09.0600 124 GLAQLLK|DA 0.087 . LmxM.09.0600 129 LKDAAAR|QV 0.126 . LmxM.09.0600 163 YLQPSLK|RA 0.066 . LmxM.09.0600 164 LQPSLKR|AA 0.157 . LmxM.09.0600 168 LKRAALK|MD 0.071 . LmxM.09.0600 179 PQDQISK|TE 0.051 . LmxM.09.0600 195 TSWSYIR|VH 0.078 . LmxM.09.0600 219 TQGNGVR|RE 0.087 . LmxM.09.0600 220 QGNGVRR|EE 0.141 . LmxM.09.0600 226 REEDFAK|ML 0.071 . LmxM.09.0600 229 DFAKMLK|RH 0.057 . LmxM.09.0600 230 FAKMLKR|HP 0.173 . LmxM.09.0600 235 KRHPTER|GV 0.222 . LmxM.09.0600 248 WALLILK|GD 0.066 . LmxM.09.0600 261 TAALPGK|TR 0.060 . LmxM.09.0600 263 ALPGKTR|AS 0.089 . LmxM.09.0600 292 DGAIQQR|CV 0.119 . LmxM.09.0600 305 QLSDLLR|EP 0.075 . LmxM.09.0600 318 VLDPFER|FH 0.095 . LmxM.09.0600 335 SGSLMQR|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >LmxM.09.0600 ATGGGCGCACCACACTTGAACTCCATTCGCGCCTGCTTGGCCGGCTCCGGCCACGACGCC TTCAGTGAGCCTGCCACAATCGACCACCTCCTCTCACTCGTGGCGACACCCAAGACGGGG GTGGTGAGTGTCGCCTACGTTGGTACCGCCACCTACGACCTCGCAGAGAGCCAGACGGAG CAGACGTCCCTGCTGCTCCAACGTGGCTGGACGGTTCGACCGATCCAACTGGCGGACCCT GCCGTGAAGACGGTCAACGACAGCGATGCGCATTTTATTCGAACCGCGGCCGATATCGTA CTTGTCTCGGGCGGCAACACACTCTACGCGGTGCGGCGGTGGGAAGAGACGGGACTCGCG CAGCTGCTGAAGGACGCTGCGGCGCGCCAGGTCGTTCTGGCGGGCGGCAGTGCCGGCGCG ATCTGCTGGTTCACCTCCGGCCACAGCGACTCCGCGGACCCCGCAACGTACCTCCAGCCA TCGTTGAAGAGGGCGGCACTGAAGATGGACCTGGTCCCGCAAGATCAGATCTCCAAGACG GAGGCAGAACTCGCGGATCTCAGCACCTCCTGGTCCTACATCCGCGTACATGGCCTCAAC ATTCTTCCGGGGATGATGTGCCCCCACTTCGATGTAACTCAAGGCAACGGCGTACGACGT GAGGAGGACTTCGCCAAGATGCTGAAGCGGCACCCAACCGAGCGGGGTGTCGGCCTGGAT CACTGGGCGCTGCTCATCCTGAAGGGCGACGGCACGTATGAAACTGCCGCGCTGCCGGGC AAGACCCGCGCCTCGACCCCACCCGATACCTCGCCCACTGCAACAGTGCCGGGCGTCTTT GTCCTTGATGTGGTGGACGGTGCTATCCAGCAACGCTGCGTGCCCACGACGGGGCAGCTG TCGGATCTCCTGCGAGAGCCGGCGGGGCCGGTGGTGCTGGATCCCTTTGAGCGTTTCCAT GCAATGGAGAACCCGACGTCGTCGTCCGGGTCTCTGATGCAGCGTTAA
  • Download Fasta

  • Fasta :-

    MGAPHLNSIRACLAGSGHDAFSEPATIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTE QTSLLLQRGWTVRPIQLADPAVKTVNDSDAHFIRTAADIVLVSGGNTLYAVRRWEETGLA QLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMDLVPQDQISKT EAELADLSTSWSYIRVHGLNILPGMMCPHFDVTQGNGVRREEDFAKMLKRHPTERGVGLD HWALLILKGDGTYETAALPGKTRASTPPDTSPTATVPGVFVLDVVDGAIQQRCVPTTGQL SDLLREPAGPVVLDPFERFHAMENPTSSSGSLMQR

  • title: active site pocket
  • coordinates: G105,S137,S151,H209,R220,H241
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.09.0600271 SPPDTSPTAT0.995unspLmxM.09.0600271 SPPDTSPTAT0.995unspLmxM.09.0600271 SPPDTSPTAT0.995unspLmxM.09.0600161 SYLQPSLKRA0.995unspLmxM.09.0600178 SQDQISKTEA0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India