LmxM.09.1300 | PPPDE putative peptidase domain containing protein, putative

  • Computed_GO_Component_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmxM.09.1300OTHER0.9990470.0007580.000196
No Results

  • Fasta :-

    >LmxM.09.1300 MDATKSGVTTLSASAGKSDVPVTSTGYEDAARQPNAVFVNVYDIMKSNSWLWPVGLGVHH AGIQVYDKEYQYGRCEEGSGVRVVEPRHSPPHIFREQFFVGQTQLSALEVRELVARLEQC DPWQGNKYHLVKHNCIHFAHAFCEALLPPDVRVAQRRTALPSTYQSAYMEEVEVDGQKYL LPVLIPPHVGRLGNYAASYLPESVLQLLDSMDNPLSTP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/676 Sequence name : 676 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 4.025 CoefTot : 0.029 ChDiff : -6 ZoneTo : 18 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.894 0.924 -0.107 0.548 MesoH : -0.753 0.061 -0.439 0.152 MuHd_075 : 7.891 1.208 1.430 0.909 MuHd_095 : 26.435 16.325 8.237 5.461 MuHd_100 : 23.069 14.321 6.300 4.291 MuHd_105 : 13.325 9.334 2.826 2.240 Hmax_075 : 9.400 4.800 0.851 1.880 Hmax_095 : 13.200 9.800 1.836 3.710 Hmax_100 : 13.200 9.800 1.705 3.710 Hmax_105 : 12.200 7.875 1.388 3.089 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9508 0.0492 DFMC : 0.9185 0.0815
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 LmxM.09.1300 MDATKSGVTTLSASAGKSDVPVTSTGYEDAARQPNAVFVNVYDIMKSNSWLWPVGLGVHHAGIQVYDKEYQYGRCEEGSG 80 VRVVEPRHSPPHIFREQFFVGQTQLSALEVRELVARLEQCDPWQGNKYHLVKHNCIHFAHAFCEALLPPDVRVAQRRTAL 160 PSTYQSAYMEEVEVDGQKYLLPVLIPPHVGRLGNYAASYLPESVLQLLDSMDNPLSTP 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.09.1300 5 --MDATK|SG 0.072 . LmxM.09.1300 17 LSASAGK|SD 0.089 . LmxM.09.1300 32 GYEDAAR|QP 0.095 . LmxM.09.1300 46 NVYDIMK|SN 0.075 . LmxM.09.1300 68 GIQVYDK|EY 0.067 . LmxM.09.1300 74 KEYQYGR|CE 0.094 . LmxM.09.1300 82 EEGSGVR|VV 0.084 . LmxM.09.1300 87 VRVVEPR|HS 0.118 . LmxM.09.1300 95 SPPHIFR|EQ 0.115 . LmxM.09.1300 111 LSALEVR|EL 0.096 . LmxM.09.1300 116 VRELVAR|LE 0.079 . LmxM.09.1300 127 DPWQGNK|YH 0.058 . LmxM.09.1300 132 NKYHLVK|HN 0.074 . LmxM.09.1300 152 LLPPDVR|VA 0.074 . LmxM.09.1300 156 DVRVAQR|RT 0.069 . LmxM.09.1300 157 VRVAQRR|TA 0.231 . LmxM.09.1300 178 VEVDGQK|YL 0.064 . LmxM.09.1300 191 IPPHVGR|LG 0.087 . ____________________________^_________________

  • Fasta :-

    >LmxM.09.1300 ATGGACGCCACGAAATCCGGTGTTACAACCCTCTCGGCTAGCGCCGGCAAGTCGGACGTG CCAGTTACCTCCACGGGCTACGAGGACGCAGCTCGCCAGCCCAACGCTGTCTTCGTCAAC GTGTACGACATTATGAAGTCCAACTCTTGGCTTTGGCCGGTCGGCCTTGGCGTGCACCAC GCTGGTATCCAGGTGTACGACAAGGAGTACCAGTACGGCCGCTGCGAGGAGGGCAGCGGC GTCCGTGTCGTCGAGCCTCGCCACTCGCCGCCGCACATTTTCCGTGAGCAGTTCTTTGTC GGGCAGACACAGCTGAGCGCGCTAGAAGTGCGGGAGCTCGTTGCCAGGCTTGAGCAGTGT GATCCGTGGCAGGGCAACAAGTATCACCTCGTGAAACACAACTGCATCCACTTCGCGCAT GCTTTCTGTGAAGCGCTGCTGCCGCCTGACGTACGGGTAGCACAGAGGCGCACGGCGCTC CCGTCTACGTACCAAAGTGCGTACATGGAGGAGGTCGAGGTGGATGGCCAAAAGTACTTA CTACCGGTGCTCATTCCCCCTCATGTGGGTCGACTGGGCAACTACGCCGCCTCCTACCTG CCAGAGTCCGTCCTGCAGCTGCTGGACTCCATGGACAACCCCTTAAGTACCCCTTGA
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  • Fasta :-

    MDATKSGVTTLSASAGKSDVPVTSTGYEDAARQPNAVFVNVYDIMKSNSWLWPVGLGVHH AGIQVYDKEYQYGRCEEGSGVRVVEPRHSPPHIFREQFFVGQTQLSALEVRELVARLEQC DPWQGNKYHLVKHNCIHFAHAFCEALLPPDVRVAQRRTALPSTYQSAYMEEVEVDGQKYL LPVLIPPHVGRLGNYAASYLPESVLQLLDSMDNPLSTP

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IDSitePeptideScoreMethod
LmxM.09.130089 SEPRHSPPHI0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India