LmxM.09.1310 | PPPDE putative peptidase domain containing protein, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.09.1310OTHER0.9999490.0000500.000001
No Results

  • Fasta :-

    >LmxM.09.1310 MDGASADDGDGAPPTQERHSLNPLGWIEEVRDASQPNAVLLNVYDVDGSSTLLCSIGWGA HHVGVQVYSKEYQYGHRPIGKGIGSVKPRHSPPHTYREQFFLGQTRLSASEVEKLVVAFS DKVEWLGNNYHLVKHNCIDFARAFCEALLPPAVRVEQARRVEEAGLSQKMHMVEVEVDGM RHSVPVLIPRHVDRLARYAAHYLPKSSMRNFDRLESSFFSMSEVPPEREQPTAADPNANR STTPAPQPHTRTGL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/530 Sequence name : 530 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 2.508 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.141 0.031 0.499 MesoH : -0.979 0.031 -0.520 0.115 MuHd_075 : 27.186 9.141 6.255 2.751 MuHd_095 : 25.042 10.509 5.073 3.296 MuHd_100 : 21.324 9.161 4.246 2.368 MuHd_105 : 13.839 5.352 3.064 1.665 Hmax_075 : -1.633 -1.983 -2.266 0.712 Hmax_095 : -4.500 -2.600 -3.370 0.560 Hmax_100 : 0.200 0.100 -1.675 1.230 Hmax_105 : -8.700 -5.200 -3.993 0.105 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9848 0.0152 DFMC : 0.9523 0.0477
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 LmxM.09.1310 MDGASADDGDGAPPTQERHSLNPLGWIEEVRDASQPNAVLLNVYDVDGSSTLLCSIGWGAHHVGVQVYSKEYQYGHRPIG 80 KGIGSVKPRHSPPHTYREQFFLGQTRLSASEVEKLVVAFSDKVEWLGNNYHLVKHNCIDFARAFCEALLPPAVRVEQARR 160 VEEAGLSQKMHMVEVEVDGMRHSVPVLIPRHVDRLARYAAHYLPKSSMRNFDRLESSFFSMSEVPPEREQPTAADPNANR 240 STTPAPQPHTRTGL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.09.1310 18 APPTQER|HS 0.087 . LmxM.09.1310 31 GWIEEVR|DA 0.145 . LmxM.09.1310 70 GVQVYSK|EY 0.063 . LmxM.09.1310 77 EYQYGHR|PI 0.138 . LmxM.09.1310 81 GHRPIGK|GI 0.097 . LmxM.09.1310 87 KGIGSVK|PR 0.064 . LmxM.09.1310 89 IGSVKPR|HS 0.149 . LmxM.09.1310 97 SPPHTYR|EQ 0.103 . LmxM.09.1310 106 FFLGQTR|LS 0.069 . LmxM.09.1310 114 SASEVEK|LV 0.077 . LmxM.09.1310 122 VVAFSDK|VE 0.058 . LmxM.09.1310 134 NNYHLVK|HN 0.064 . LmxM.09.1310 142 NCIDFAR|AF 0.110 . LmxM.09.1310 154 LLPPAVR|VE 0.071 . LmxM.09.1310 159 VRVEQAR|RV 0.199 . LmxM.09.1310 160 RVEQARR|VE 0.150 . LmxM.09.1310 169 EAGLSQK|MH 0.060 . LmxM.09.1310 181 VEVDGMR|HS 0.077 . LmxM.09.1310 190 VPVLIPR|HV 0.127 . LmxM.09.1310 194 IPRHVDR|LA 0.147 . LmxM.09.1310 197 HVDRLAR|YA 0.376 . LmxM.09.1310 205 AAHYLPK|SS 0.098 . LmxM.09.1310 209 LPKSSMR|NF 0.135 . LmxM.09.1310 213 SMRNFDR|LE 0.106 . LmxM.09.1310 228 SEVPPER|EQ 0.073 . LmxM.09.1310 240 ADPNANR|ST 0.126 . LmxM.09.1310 251 APQPHTR|TG 0.094 . ____________________________^_________________

  • Fasta :-

    >LmxM.09.1310 ATGGACGGGGCTAGTGCAGATGACGGGGATGGCGCTCCGCCGACGCAGGAGCGCCATTCT CTGAACCCGCTTGGGTGGATAGAGGAGGTGCGCGACGCGAGCCAGCCAAACGCCGTCCTT CTCAATGTTTACGATGTGGACGGCAGCAGCACGCTCCTGTGCTCCATTGGGTGGGGCGCG CATCATGTCGGCGTGCAGGTGTACAGCAAGGAGTACCAGTATGGTCATCGCCCCATCGGC AAAGGCATCGGCAGTGTCAAGCCTCGCCACTCGCCTCCGCACACGTACCGGGAGCAGTTC TTCCTCGGTCAGACGCGGCTGAGCGCGTCCGAGGTGGAGAAGCTGGTGGTGGCCTTCTCG GACAAGGTGGAGTGGCTGGGCAACAACTACCATCTCGTGAAACACAACTGCATCGACTTC GCTCGAGCATTTTGCGAGGCGCTCCTGCCGCCCGCAGTACGCGTGGAGCAGGCGCGACGG GTGGAGGAGGCGGGACTGTCGCAGAAGATGCACATGGTGGAGGTCGAGGTGGACGGAATG CGGCACTCGGTGCCGGTGCTCATACCGCGCCACGTCGACCGGCTAGCGCGGTATGCAGCG CACTACCTGCCGAAATCTTCCATGCGGAACTTCGACCGACTTGAAAGCTCGTTCTTCAGC ATGTCTGAGGTGCCCCCGGAGCGAGAGCAGCCCACCGCTGCGGATCCCAATGCGAATCGA AGCACAACCCCAGCACCGCAGCCCCACACCCGCACAGGTCTTTAG
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  • Fasta :-

    MDGASADDGDGAPPTQERHSLNPLGWIEEVRDASQPNAVLLNVYDVDGSSTLLCSIGWGA HHVGVQVYSKEYQYGHRPIGKGIGSVKPRHSPPHTYREQFFLGQTRLSASEVEKLVVAFS DKVEWLGNNYHLVKHNCIDFARAFCEALLPPAVRVEQARRVEEAGLSQKMHMVEVEVDGM RHSVPVLIPRHVDRLARYAAHYLPKSSMRNFDRLESSFFSMSEVPPEREQPTAADPNANR STTPAPQPHTRTGL

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.09.1310108 SQTRLSASEV0.996unspLmxM.09.1310108 SQTRLSASEV0.996unspLmxM.09.1310108 SQTRLSASEV0.996unspLmxM.09.131020 SQERHSLNPL0.992unspLmxM.09.131091 SKPRHSPPHT0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India