LmxM.11.0240 | proteasome alpha 7 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.11.0240OTHER0.9999760.0000160.000009
No Results

  • Fasta :-

    >LmxM.11.0240 MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGGDCVVIAVEKKSAVKLQDSRTIR KIYKVDAHIYLAFAGLSADARVLINKAQLECQRFSLNYEDTMDVDMLVRYVAGVQQKSTQ SGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVAIGRHDQTVIEYMEKSYKDGM SRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK KRQAEQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/883 Sequence name : 883 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.371 2.112 0.398 0.722 MesoH : -0.959 0.415 -0.442 0.168 MuHd_075 : 28.919 14.664 6.446 4.721 MuHd_095 : 12.399 8.752 2.980 2.865 MuHd_100 : 14.983 13.569 5.107 4.806 MuHd_105 : 16.326 16.793 6.151 6.188 Hmax_075 : 13.650 10.150 1.599 4.130 Hmax_095 : 7.788 5.162 -0.059 3.614 Hmax_100 : 8.300 11.100 0.052 4.310 Hmax_105 : 4.500 10.600 -0.224 4.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9698 0.0302 DFMC : 0.9774 0.0226
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 LmxM.11.0240 MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGGDCVVIAVEKKSAVKLQDSRTIRKIYKVDAHIYLAFAGLSADA 80 RVLINKAQLECQRFSLNYEDTMDVDMLVRYVAGVQQKSTQSGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVA 160 IGRHDQTVIEYMEKSYKDGMSRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK 240 KRQAEQE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .P..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.11.0240 5 --MSYDR|AI 0.082 . LmxM.11.0240 27 YAQEAVK|KG 0.060 . LmxM.11.0240 28 AQEAVKK|GL 0.143 . LmxM.11.0240 47 VVIAVEK|KS 0.060 . LmxM.11.0240 48 VIAVEKK|SA 0.238 . LmxM.11.0240 52 EKKSAVK|LQ 0.054 . LmxM.11.0240 57 VKLQDSR|TI 0.079 . LmxM.11.0240 60 QDSRTIR|KI 0.408 . LmxM.11.0240 61 DSRTIRK|IY 0.073 . LmxM.11.0240 64 TIRKIYK|VD 0.066 . LmxM.11.0240 81 GLSADAR|VL 0.103 . LmxM.11.0240 86 ARVLINK|AQ 0.063 . LmxM.11.0240 93 AQLECQR|FS 0.097 . LmxM.11.0240 109 DVDMLVR|YV 0.107 . LmxM.11.0240 117 VAGVQQK|ST 0.102 . LmxM.11.0240 125 TQSGGSR|PF 0.126 . LmxM.11.0240 141 GFNEDGK|PH 0.063 . LmxM.11.0240 146 GKPHLWK|TD 0.069 . LmxM.11.0240 157 GMCSAWR|AV 0.176 . LmxM.11.0240 163 RAVAIGR|HD 0.103 . LmxM.11.0240 174 VIEYMEK|SY 0.075 . LmxM.11.0240 177 YMEKSYK|DG 0.066 . LmxM.11.0240 182 YKDGMSR|DE 0.089 . LmxM.11.0240 191 CVHFAIK|SL 0.076 . LmxM.11.0240 202 VVESGSR|NI 0.067 . LmxM.11.0240 212 LLVLQYK|EE 0.058 . LmxM.11.0240 215 LQYKEER|YL 0.112 . LmxM.11.0240 224 TEEELQK|FV 0.087 . LmxM.11.0240 231 FVVEVEK|ER 0.058 . LmxM.11.0240 233 VEVEKER|EE 0.081 . LmxM.11.0240 239 REEEAAK|KK 0.070 . LmxM.11.0240 240 EEEAAKK|KR 0.090 . LmxM.11.0240 241 EEAAKKK|RQ 0.108 . LmxM.11.0240 242 EAAKKKR|QA 0.500 *ProP* ____________________________^_________________

  • Fasta :-

    >LmxM.11.0240 ATGAGCTACGATCGCGCCATCACTGTCTTTTCCCCGGACGGACATCTCTTCCAGGTCGAG TACGCTCAGGAGGCCGTGAAGAAGGGCTTGGCGGCTGTCGGTGTGCTCGGTGGTGACTGC GTTGTCATTGCGGTGGAGAAGAAGTCTGCTGTCAAGCTGCAGGACAGTCGCACCATCCGT AAGATCTACAAAGTGGATGCGCACATCTACCTCGCCTTCGCCGGCCTTTCCGCCGACGCG CGTGTGCTCATCAACAAGGCTCAGCTCGAGTGCCAGCGCTTCTCGCTCAACTACGAGGAT ACCATGGACGTGGACATGCTCGTGCGCTACGTCGCCGGGGTGCAGCAGAAGTCGACGCAG AGCGGCGGAAGCCGCCCGTTCGGGGTGGCCACAGTGATTGGGGGGTTCAACGAGGACGGC AAGCCACACCTATGGAAGACCGACCCATCTGGCATGTGCTCTGCCTGGCGTGCCGTCGCC ATCGGCCGCCACGACCAGACGGTGATTGAGTACATGGAGAAGAGCTACAAGGATGGCATG TCGCGCGACGAGTGCGTGCACTTCGCGATCAAGTCGCTGCTGGAGGTGGTGGAGAGCGGC TCGCGCAACATCGAGCTACTGGTGCTGCAGTACAAGGAGGAGCGCTACCTGACCGAGGAA GAGCTGCAGAAGTTCGTCGTGGAGGTGGAGAAGGAAAGGGAAGAGGAGGCGGCGAAGAAG AAGCGCCAGGCAGAGCAGGAGTAG
  • Download Fasta

  • Fasta :-

    MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGGDCVVIAVEKKSAVKLQDSRTIR KIYKVDAHIYLAFAGLSADARVLINKAQLECQRFSLNYEDTMDVDMLVRYVAGVQQKSTQ SGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVAIGRHDQTVIEYMEKSYKDGM SRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK KRQAEQE

  • title: active site
  • coordinates: L30,E46,K48,K61,R163
No Results
No Results
IDSitePeptideScoreMethod
LmxM.11.0240175 SYMEKSYKDG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India