LmxM.11.0620 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LmxM.11.0620OTHER0.9983100.0009950.000695
No Results

  • Fasta :-

    >LmxM.11.0620 MAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAIGPN SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYATGEQCFIPDVVIDMATLTGAQGVA TGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSPSS AGSSCGGYFVEQQLSERFKGPFVHVDMAYPKRK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/106 Sequence name : 106 Sequence length : 273 VALUES OF COMPUTED PARAMETERS Coef20 : 3.104 CoefTot : -0.222 ChDiff : -1 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.547 0.277 0.600 MesoH : -0.138 0.470 -0.243 0.265 MuHd_075 : 12.006 11.421 4.062 4.078 MuHd_095 : 15.395 8.812 4.298 1.799 MuHd_100 : 15.785 9.712 5.582 2.031 MuHd_105 : 15.951 10.596 6.297 2.191 Hmax_075 : 3.700 11.800 0.618 5.000 Hmax_095 : 4.462 6.037 -0.454 3.238 Hmax_100 : 1.700 9.000 0.153 3.060 Hmax_105 : 11.667 10.033 2.440 4.970 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9813 0.0187 DFMC : 0.9839 0.0161
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 273 LmxM.11.0620 MAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYDCGGLALKPAAHMTNMKTDMGGSA 80 GVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAIGPNSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYATGEQ 160 CFIPDVVIDMATLTGAQGVATGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSPSS 240 AGSSCGGYFVEQQLSERFKGPFVHVDMAYPKRK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.11.0620 5 --MAVIK|GE 0.068 . LmxM.11.0620 10 IKGEELR|EK 0.113 . LmxM.11.0620 12 GEELREK|GY 0.083 . LmxM.11.0620 22 GIYAVGK|CA 0.071 . LmxM.11.0620 34 PHLVTLR|YR 0.076 . LmxM.11.0620 36 LVTLRYR|NP 0.078 . LmxM.11.0620 45 NATVGAK|NV 0.074 . LmxM.11.0620 52 NVAMTGK|GI 0.070 . LmxM.11.0620 64 CGGLALK|PA 0.063 . LmxM.11.0620 73 AHMTNMK|TD 0.064 . LmxM.11.0620 91 AFIAVVR|SM 0.112 . LmxM.11.0620 94 AVVRSMK|MQ 0.141 . LmxM.11.0620 97 RSMKMQK|DH 0.079 . LmxM.11.0620 123 IGPNSYR|ND 0.090 . LmxM.11.0620 131 DDVVVMK|SG 0.089 . LmxM.11.0620 134 VVMKSGK|SV 0.130 . LmxM.11.0620 146 NTDAEGR|IV 0.089 . LmxM.11.0620 184 GVATGSR|HA 0.130 . LmxM.11.0620 197 SDAEVEK|NM 0.067 . LmxM.11.0620 225 YHEEVYK|SP 0.082 . LmxM.11.0620 232 SPCADMR|NI 0.119 . LmxM.11.0620 257 EQQLSER|FK 0.106 . LmxM.11.0620 259 QLSERFK|GP 0.088 . LmxM.11.0620 271 VDMAYPK|RK 0.063 . LmxM.11.0620 272 DMAYPKR|K- 0.176 . LmxM.11.0620 273 MAYPKRK|-- 0.114 . ____________________________^_________________

  • Fasta :-

    >LmxM.11.0620 ATGGCTGTGATCAAGGGTGAGGAGCTGCGCGAGAAGGGCTACGGCGGTATCTACGCTGTG GGCAAGTGTGCGCAGTACCCGCCGCACCTGGTGACGCTGCGCTACAGGAACCCGAACGCC ACTGTGGGCGCCAAGAATGTTGCGATGACTGGCAAGGGTATCGTGTACGACTGCGGCGGC CTTGCGCTGAAGCCGGCCGCGCACATGACGAACATGAAGACGGACATGGGCGGCTCCGCC GGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAGATGCAGAAGGATCACTTC AGCCACATCGCCAACATCAGCGTGACGCTGTGCTTGGCGGAGAACGCGATCGGCCCCAAC TCGTACCGAAACGACGACGTCGTGGTGATGAAGTCGGGCAAGTCGGTGGAGGTGATGAAC ACGGATGCCGAGGGCCGCATCGTGCTTGGCGACGGCGTGTTCTACGCGACGGGGGAGCAG TGCTTCATCCCGGATGTGGTGATCGACATGGCGACGCTGACGGGTGCGCAGGGTGTGGCG ACGGGGTCGAGGCACGCCGGCATTTACGTCAGCGATGCCGAGGTAGAGAAGAACATGGTC ACTGCGGGCCTGCAGTCCGGCGACCTGTGCTACCCAGTGCTGTACTGCCCCGAGTACCAC GAGGAGGTGTACAAAAGCCCCTGCGCCGATATGCGCAACATTGCGAACTCGCCATCCAGC GCCGGCTCGAGCTGCGGCGGGTACTTTGTCGAGCAGCAACTGAGCGAGCGCTTCAAGGGC CCCTTCGTCCACGTTGATATGGCCTACCCCAAACGCAAATGA
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  • Fasta :-

    MAVIKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNATVGAKNVAMTGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQKDHFSHIANISVTLCLAENAIGPN SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVFYATGEQCFIPDVVIDMATLTGAQGVA TGSRHAGIYVSDAEVEKNMVTAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNIANSPSS AGSSCGGYFVEQQLSERFKGPFVHVDMAYPKRK

  • title: Substrate-binding/catalytic site
  • coordinates: K52,D57,K64,D75,D142,E144,R146,L173
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.11.0620237 SNIANSPSSA0.991unspLmxM.11.0620237 SNIANSPSSA0.991unspLmxM.11.0620237 SNIANSPSSA0.991unspLmxM.11.062092 SAVVRSMKMQ0.993unspLmxM.11.0620121 SIGPNSYRND0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India