LmxM.12.0030 | proteasome beta-1 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.12.0030OTHER0.9995140.0003640.000122
No Results

  • Fasta :-

    >LmxM.12.0030 MLQRPDHTLLQDPSYPKDIEQKLTENGPAQEGKQLFKPDPAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTKKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDLINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPDMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEPED QTVPWNRSPYCMEKDPKYQVQAVLNPPFSSSAKITGNRMSSTV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/562 Sequence name : 562 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 2.818 CoefTot : -0.151 ChDiff : 0 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.382 0.185 0.555 MesoH : 0.139 0.538 -0.148 0.340 MuHd_075 : 24.580 14.366 8.049 4.834 MuHd_095 : 17.267 14.785 5.152 4.594 MuHd_100 : 21.656 15.329 6.778 5.621 MuHd_105 : 17.941 12.988 6.443 5.628 Hmax_075 : 10.150 6.767 0.497 3.547 Hmax_095 : -5.775 2.362 -3.671 1.558 Hmax_100 : 0.600 2.100 -1.906 2.300 Hmax_105 : 0.100 2.400 -1.841 2.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9630 0.0370 DFMC : 0.9624 0.0376
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 LmxM.12.0030 MLQRPDHTLLQDPSYPKDIEQKLTENGPAQEGKQLFKPDPAVIDPQLSEAVSLGTTILAVSYKGGVVLAADSRTSSGTYV 80 VNRASNKLTKLTKKIYCCRSGSAADTQALAERVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDLI 160 NGGSVYSIPSGGSCVKLDYALGGSGSIFLYSFFDANYKPDMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEPED 240 QTVPWNRSPYCMEKDPKYQVQAVLNPPFSSSAKITGNRMSSTV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.12.0030 4 ---MLQR|PD 0.088 . LmxM.12.0030 17 QDPSYPK|DI 0.085 . LmxM.12.0030 22 PKDIEQK|LT 0.075 . LmxM.12.0030 33 GPAQEGK|QL 0.087 . LmxM.12.0030 37 EGKQLFK|PD 0.063 . LmxM.12.0030 63 ILAVSYK|GG 0.067 . LmxM.12.0030 73 VLAADSR|TS 0.077 . LmxM.12.0030 83 GTYVVNR|AS 0.100 . LmxM.12.0030 87 VNRASNK|LT 0.060 . LmxM.12.0030 90 ASNKLTK|LT 0.073 . LmxM.12.0030 93 KLTKLTK|KI 0.067 . LmxM.12.0030 94 LTKLTKK|IY 0.082 . LmxM.12.0030 99 KKIYCCR|SG 0.150 . LmxM.12.0030 112 TQALAER|VS 0.081 . LmxM.12.0030 139 AANLFHK|MC 0.072 . LmxM.12.0030 145 KMCYVNR|WN 0.099 . LmxM.12.0030 176 SGGSCVK|LD 0.064 . LmxM.12.0030 198 FFDANYK|PD 0.054 . LmxM.12.0030 203 YKPDMSK|SE 0.080 . LmxM.12.0030 212 CVAFCQR|AV 0.102 . LmxM.12.0030 220 VAHAYSR|DG 0.116 . LmxM.12.0030 229 SSGGLIR|TI 0.082 . LmxM.12.0030 247 QTVPWNR|SP 0.147 . LmxM.12.0030 254 SPYCMEK|DP 0.073 . LmxM.12.0030 257 CMEKDPK|YQ 0.066 . LmxM.12.0030 273 PFSSSAK|IT 0.084 . LmxM.12.0030 278 AKITGNR|MS 0.105 . ____________________________^_________________

  • Fasta :-

    >LmxM.12.0030 ATGCTTCAGCGTCCTGATCATACTCTTCTGCAAGACCCTTCGTATCCGAAGGATATCGAG CAGAAGCTGACGGAGAATGGTCCAGCACAGGAAGGCAAGCAGTTGTTTAAGCCGGATCCC GCCGTGATTGATCCGCAGCTAAGCGAGGCCGTCTCTCTGGGCACAACAATTCTTGCTGTC TCGTACAAAGGTGGTGTTGTTCTTGCCGCTGACTCGCGCACTTCATCCGGCACATATGTC GTGAATCGTGCCAGCAACAAGCTGACGAAGCTGACGAAGAAGATTTACTGCTGCCGAAGT GGTTCTGCCGCGGATACACAGGCTCTTGCTGAGCGTGTCTCGAACTACCTTGGTAGCTAT CAAACCGATATCGGCGCAGACGTGAATGTTGCCACGGCAGCGAATCTGTTTCACAAGATG TGCTATGTGAACAGGTGGAACATCTCGGCGGGCATTATCGTCGCTGGGTACGACCTGATC AACGGAGGGTCGGTGTACAGCATCCCATCTGGCGGGTCGTGCGTGAAGCTCGACTACGCA CTTGGCGGCAGCGGCTCCATTTTCTTGTATTCGTTCTTTGATGCCAACTATAAACCGGAT ATGTCAAAGAGCGAGTGCGTTGCCTTCTGCCAGCGCGCTGTCGCGCACGCGTACAGCCGC GACGGCTCCAGCGGCGGTCTGATTCGTACGATTACCCTCGACGCTGACGAGCCAGAGGAC CAGACAGTCCCGTGGAACCGGTCACCCTACTGCATGGAGAAGGATCCCAAATATCAGGTG CAGGCCGTGCTGAACCCGCCCTTCAGCAGCAGCGCGAAGATTACTGGAAATCGGATGTCT TCGACAGTGTGA
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  • Fasta :-

    MLQRPDHTLLQDPSYPKDIEQKLTENGPAQEGKQLFKPDPAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTKKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDLINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPDMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDADEPED QTVPWNRSPYCMEKDPKYQVQAVLNPPFSSSAKITGNRMSSTV

  • title: active site
  • coordinates: T55,D71,R73,K87,S184,D221,S224,G225
No Results
No Results
IDSitePeptideScoreMethod
LmxM.12.003061 SILAVSYKGG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India