LmxM.12.0210 | proteasome regulatory ATPase subunittcc1l8.3, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.12.0210OTHER0.9986630.0001900.001147
No Results

  • Fasta :-

    >LmxM.12.0210 MAASSVASVSATKASAMAAKKAEKDAHVSRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/810 Sequence name : 810 Sequence length : 411 VALUES OF COMPUTED PARAMETERS Coef20 : 5.001 CoefTot : 1.490 ChDiff : 3 ZoneTo : 22 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.000 1.382 -0.013 0.475 MesoH : -0.539 0.324 -0.369 0.176 MuHd_075 : 12.261 7.869 3.351 2.782 MuHd_095 : 20.352 11.652 6.902 4.157 MuHd_100 : 18.312 6.726 5.967 2.705 MuHd_105 : 16.355 5.568 5.235 2.332 Hmax_075 : 14.875 12.688 1.842 4.209 Hmax_095 : 10.325 12.500 1.591 3.540 Hmax_100 : 9.200 12.500 1.097 2.740 Hmax_105 : 8.225 6.600 0.550 1.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7009 0.2991 DFMC : 0.4016 0.5984 This protein is probably imported in chloroplast. f(Ser) = 0.2273 f(Arg) = 0.0000 CMi = 3.24675 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 411 LmxM.12.0210 MAASSVASVSATKASAMAAKKAEKDAHVSRSLFEEYEQLSKDIKNIQLKTMICRTETHQLMKEESAAKQEVKRIQAVPLV 80 LGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNVSVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVG 160 GLDMQKQEIREAVELPLTHAGLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR 240 DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVIMATNRWDTLDPALLRPGRLD 320 RKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPEKLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIK 400 KTGDETYDFYS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............P.................................................................. 400 ........... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.12.0210 13 ASVSATK|AS 0.061 . LmxM.12.0210 20 ASAMAAK|KA 0.095 . LmxM.12.0210 21 SAMAAKK|AE 0.103 . LmxM.12.0210 24 AAKKAEK|DA 0.092 . LmxM.12.0210 30 KDAHVSR|SL 0.205 . LmxM.12.0210 41 EYEQLSK|DI 0.062 . LmxM.12.0210 44 QLSKDIK|NI 0.069 . LmxM.12.0210 49 IKNIQLK|TM 0.066 . LmxM.12.0210 54 LKTMICR|TE 0.090 . LmxM.12.0210 62 ETHQLMK|EE 0.070 . LmxM.12.0210 68 KEESAAK|QE 0.058 . LmxM.12.0210 72 AAKQEVK|RI 0.070 . LmxM.12.0210 73 AKQEVKR|IQ 0.148 . LmxM.12.0210 92 EVVDSVR|GI 0.087 . LmxM.12.0210 106 GSQYFVR|IL 0.129 . LmxM.12.0210 113 ILSTLNK|EH 0.060 . LmxM.12.0210 117 LNKEHLK|PN 0.067 . LmxM.12.0210 126 VSVGLHK|SS 0.081 . LmxM.12.0210 151 LLNSSDR|PD 0.088 . LmxM.12.0210 166 GGLDMQK|QE 0.056 . LmxM.12.0210 170 MQKQEIR|EA 0.097 . LmxM.12.0210 192 IGIDPPR|GV 0.129 . LmxM.12.0210 204 GPPGTGK|TM 0.057 . LmxM.12.0210 209 GKTMLVK|AV 0.077 . LmxM.12.0210 213 LVKAVAR|HT 0.122 . LmxM.12.0210 216 AVARHTK|AS 0.150 . LmxM.12.0210 221 TKASFIR|VV 0.223 . LmxM.12.0210 230 GSEFVQK|FL 0.106 . LmxM.12.0210 237 FLGEGPR|KV 0.133 . LmxM.12.0210 238 LGEGPRK|VR 0.069 . LmxM.12.0210 240 EGPRKVR|DV 0.382 . LmxM.12.0210 244 KVRDVFR|LA 0.127 . LmxM.12.0210 247 DVFRLAR|EN 0.193 . LmxM.12.0210 265 VDSIATK|RF 0.069 . LmxM.12.0210 266 DSIATKR|FD 0.204 . LmxM.12.0210 275 AQTGADR|EV 0.099 . LmxM.12.0210 279 ADREVQR|VL 0.106 . LmxM.12.0210 298 DQTTNVK|VI 0.058 . LmxM.12.0210 305 VIMATNR|WD 0.076 . LmxM.12.0210 315 LDPALLR|PG 0.068 . LmxM.12.0210 318 ALLRPGR|LD 0.212 . LmxM.12.0210 321 RPGRLDR|KI 0.275 . LmxM.12.0210 322 PGRLDRK|IE 0.070 . LmxM.12.0210 330 EFPYPDR|RQ 0.065 . LmxM.12.0210 331 FPYPDRR|QK 0.119 . LmxM.12.0210 333 YPDRRQK|RL 0.118 . LmxM.12.0210 334 PDRRQKR|LV 0.807 *ProP* LmxM.12.0210 343 FQVCTSK|MN 0.057 . LmxM.12.0210 358 LEDYVTR|PE 0.081 . LmxM.12.0210 361 YVTRPEK|LS 0.126 . LmxM.12.0210 380 AGMLAVR|KN 0.073 . LmxM.12.0210 381 GMLAVRK|NR 0.081 . LmxM.12.0210 383 LAVRKNR|YV 0.387 . LmxM.12.0210 389 RYVILPR|DI 0.145 . LmxM.12.0210 396 DIENAYR|TV 0.119 . LmxM.12.0210 400 AYRTVIK|KT 0.089 . LmxM.12.0210 401 YRTVIKK|TG 0.097 . ____________________________^_________________

  • Fasta :-

    >LmxM.12.0210 ATGGCCGCCTCCAGCGTTGCATCCGTGTCCGCCACGAAGGCCTCTGCTATGGCCGCCAAG AAGGCGGAGAAGGACGCGCATGTCAGTCGTTCTCTCTTCGAGGAGTACGAGCAGCTCAGC AAAGACATCAAGAACATACAGCTCAAGACGATGATCTGCAGGACCGAGACACACCAGCTC ATGAAGGAGGAGAGCGCGGCGAAGCAGGAGGTGAAGCGCATCCAGGCGGTGCCCCTCGTC CTCGGCAACTTCGTCGAGGTCGTGGACAGCGTACGCGGTATCGTGAGCGGCACGAGCGGC TCGCAGTACTTTGTGCGCATTCTTTCCACCCTCAACAAGGAGCACCTCAAGCCGAACGTC AGCGTTGGCCTGCACAAGAGCAGCAACGCCTGCGTGCAGCTGCTGCCGAGCGAAACGGAC GCGACGATCACGCTGCTCAACTCGAGCGACAGGCCCGACGTCACGTACTCGGACGTGGGT GGTCTGGACATGCAGAAGCAGGAGATTCGCGAGGCGGTGGAGCTGCCGCTGACCCACGCG GGCCTGTACGAGCAGATTGGTATCGACCCTCCGCGTGGTGTGCTGCTCTACGGCCCGCCC GGCACCGGCAAGACAATGCTGGTGAAAGCCGTGGCGCGGCACACGAAGGCATCCTTCATC CGCGTTGTCGGCAGCGAGTTTGTGCAGAAGTTCCTCGGCGAGGGCCCGCGCAAGGTGCGT GACGTGTTTCGTCTCGCCCGCGAGAACGCGCCATCGATTATCTTCATCGACGAGGTCGAC TCCATCGCGACCAAGCGTTTTGATGCTCAGACCGGTGCCGATCGTGAGGTGCAGCGTGTG CTTGTGGAACTGCTTACCCAGATGGACGGCTTTGACCAGACAACCAACGTCAAGGTCATC ATGGCCACAAACCGCTGGGACACGCTGGACCCCGCACTGCTGCGCCCTGGCCGCCTCGAT CGAAAGATCGAGTTCCCGTACCCTGACCGCCGCCAGAAGCGCCTTGTCTTCCAGGTATGC ACGTCGAAGATGAACCTGTCGCCTGAAGTAGACCTCGAAGACTACGTGACTCGGCCGGAG AAGCTCAGCGGCGCCGACATCCAGTCCATCTGCCAGGAAGCGGGTATGCTGGCGGTGCGG AAGAATCGGTACGTCATCTTGCCGCGCGACATCGAGAACGCGTACCGGACGGTGATCAAG AAGACTGGGGATGAGACGTACGACTTCTACTCGTGA
  • Download Fasta

  • Fasta :-

    MAASSVASVSATKASAMAAKKAEKDAHVSRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS

  • title: ATP binding site
  • coordinates: P199,P200,G201,T202,G203,K204,T205,M206,D257,N304
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India