LmxM.13.1140 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.13.1140OTHER0.8711200.0007740.128106
No Results

  • Fasta :-

    >LmxM.13.1140 MQRGANVRPIKLAQKVFSAKTVCPTAASQLYVAHGLLGNSSNWATASRHLVEHPALKDKL RRAIPVDMRNHGSSAHSSDHTNAALASDLEALVLREQQELAHTFRDPASCTTRNAILIGH SMGGLAVMGMLLRRANEDRLLTSWADHCDDAGSAPSYGAWPAEHRRQCIDGMRHVNESFG FASSQPIAEVLFNNRGASSSPSTDSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSGADN VKEALERMTQVRLDEIHSYKDAAAELLRVGMAEQEMRDFVATNIVLDSKDKSKPAQWRCN LPVLASDYGSFQPSITSWFTSSATTTGQASSAAAPRLCTLPVMFVFGGQSPYNEPDHRQR ISRFFSNATQVEVAGAGHFLHYEKPKEFTDAVAPFIASLISQP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/219 Sequence name : 219 Sequence length : 403 VALUES OF COMPUTED PARAMETERS Coef20 : 4.173 CoefTot : -0.394 ChDiff : 1 ZoneTo : 51 KR : 6 DE : 0 CleavSite : 58 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.965 1.782 0.245 0.716 MesoH : -0.145 0.073 -0.297 0.152 MuHd_075 : 33.535 27.524 11.073 8.106 MuHd_095 : 32.959 16.238 7.867 7.180 MuHd_100 : 21.867 17.859 6.044 5.072 MuHd_105 : 25.166 22.109 8.712 6.608 Hmax_075 : 16.917 18.783 3.389 5.915 Hmax_095 : 9.975 9.800 0.154 3.981 Hmax_100 : 6.500 15.700 1.121 3.060 Hmax_105 : 13.300 21.350 4.302 5.052 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0566 0.9434 DFMC : 0.0632 0.9368 This protein is probably imported in mitochondria. f(Ser) = 0.0980 f(Arg) = 0.0588 CMi = 0.64350 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 403 LmxM.13.1140 MQRGANVRPIKLAQKVFSAKTVCPTAASQLYVAHGLLGNSSNWATASRHLVEHPALKDKLRRAIPVDMRNHGSSAHSSDH 80 TNAALASDLEALVLREQQELAHTFRDPASCTTRNAILIGHSMGGLAVMGMLLRRANEDRLLTSWADHCDDAGSAPSYGAW 160 PAEHRRQCIDGMRHVNESFGFASSQPIAEVLFNNRGASSSPSTDSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSGADN 240 VKEALERMTQVRLDEIHSYKDAAAELLRVGMAEQEMRDFVATNIVLDSKDKSKPAQWRCNLPVLASDYGSFQPSITSWFT 320 SSATTTGQASSAAAPRLCTLPVMFVFGGQSPYNEPDHRQRISRFFSNATQVEVAGAGHFLHYEKPKEFTDAVAPFIASLI 400 SQP 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.13.1140 3 ----MQR|GA 0.092 . LmxM.13.1140 8 QRGANVR|PI 0.110 . LmxM.13.1140 11 ANVRPIK|LA 0.178 . LmxM.13.1140 15 PIKLAQK|VF 0.062 . LmxM.13.1140 20 QKVFSAK|TV 0.089 . LmxM.13.1140 48 NWATASR|HL 0.085 . LmxM.13.1140 57 VEHPALK|DK 0.057 . LmxM.13.1140 59 HPALKDK|LR 0.070 . LmxM.13.1140 61 ALKDKLR|RA 0.115 . LmxM.13.1140 62 LKDKLRR|AI 0.139 . LmxM.13.1140 69 AIPVDMR|NH 0.087 . LmxM.13.1140 95 LEALVLR|EQ 0.087 . LmxM.13.1140 105 ELAHTFR|DP 0.100 . LmxM.13.1140 113 PASCTTR|NA 0.147 . LmxM.13.1140 133 VMGMLLR|RA 0.074 . LmxM.13.1140 134 MGMLLRR|AN 0.168 . LmxM.13.1140 139 RRANEDR|LL 0.105 . LmxM.13.1140 165 AWPAEHR|RQ 0.073 . LmxM.13.1140 166 WPAEHRR|QC 0.249 . LmxM.13.1140 173 QCIDGMR|HV 0.112 . LmxM.13.1140 195 EVLFNNR|GA 0.103 . LmxM.13.1140 210 DSGNASR|IP 0.076 . LmxM.13.1140 216 RIPLLGR|VA 0.124 . LmxM.13.1140 230 DVTPTMR|LG 0.068 . LmxM.13.1140 235 MRLGEQR|SG 0.138 . LmxM.13.1140 242 SGADNVK|EA 0.069 . LmxM.13.1140 247 VKEALER|MT 0.093 . LmxM.13.1140 252 ERMTQVR|LD 0.092 . LmxM.13.1140 260 DEIHSYK|DA 0.091 . LmxM.13.1140 268 AAAELLR|VG 0.082 . LmxM.13.1140 277 MAEQEMR|DF 0.097 . LmxM.13.1140 289 NIVLDSK|DK 0.064 . LmxM.13.1140 291 VLDSKDK|SK 0.073 . LmxM.13.1140 293 DSKDKSK|PA 0.069 . LmxM.13.1140 298 SKPAQWR|CN 0.118 . LmxM.13.1140 336 SSAAAPR|LC 0.082 . LmxM.13.1140 358 YNEPDHR|QR 0.077 . LmxM.13.1140 360 EPDHRQR|IS 0.079 . LmxM.13.1140 363 HRQRISR|FF 0.499 . LmxM.13.1140 384 HFLHYEK|PK 0.057 . LmxM.13.1140 386 LHYEKPK|EF 0.083 . ____________________________^_________________

  • Fasta :-

    >LmxM.13.1140 ATGCAGCGGGGGGCCAACGTGCGCCCGATAAAATTGGCGCAGAAGGTGTTCAGCGCCAAG ACGGTGTGTCCAACGGCGGCGAGTCAGCTGTACGTGGCCCACGGTCTCCTCGGCAATTCG AGCAACTGGGCAACCGCCTCGCGCCACCTTGTCGAGCACCCTGCTCTCAAAGACAAGCTC CGTCGCGCGATCCCGGTGGACATGCGCAACCACGGCAGCAGTGCGCACAGCAGTGACCAC ACGAACGCGGCGCTTGCCTCTGATCTCGAAGCGCTGGTGCTGCGCGAACAGCAGGAGTTG GCCCACACCTTTCGTGACCCGGCCTCGTGTACGACACGGAACGCCATCCTGATTGGGCAC AGCATGGGCGGCTTGGCGGTGATGGGTATGCTGTTGCGGCGCGCCAACGAGGATCGTCTG CTGACCTCGTGGGCTGATCACTGTGACGACGCGGGTTCGGCGCCGTCCTACGGGGCGTGG CCGGCGGAGCACCGTCGTCAGTGCATCGATGGAATGCGTCATGTGAACGAGTCGTTCGGC TTCGCTTCCTCGCAGCCCATCGCGGAAGTGCTCTTCAATAACCGGGGTGCGTCCTCCTCA CCATCAACGGACAGCGGTAATGCTTCCCGCATCCCGCTGCTGGGCCGCGTCGCTGGTGCT ATCATTGTGGACGTGACGCCAACAATGCGGCTGGGTGAACAGCGCAGCGGCGCTGACAAC GTCAAGGAGGCGCTCGAGCGCATGACGCAGGTGCGACTGGACGAGATTCACAGCTACAAG GACGCAGCGGCAGAGCTGCTTCGAGTCGGCATGGCTGAGCAGGAAATGCGCGATTTTGTG GCGACGAACATCGTGCTTGATTCCAAGGACAAGTCGAAGCCCGCGCAGTGGAGGTGCAAT CTGCCGGTCCTCGCCAGCGACTACGGCAGCTTCCAGCCATCCATCACGAGCTGGTTCACA TCGTCGGCAACGACGACGGGGCAAGCGTCCTCGGCTGCCGCGCCGCGGCTGTGCACGCTT CCTGTCATGTTCGTCTTTGGTGGTCAGTCGCCCTACAACGAGCCGGATCACCGCCAGCGC ATTTCGCGCTTCTTCTCCAACGCAACGCAGGTGGAGGTGGCCGGCGCAGGTCATTTTCTG CATTACGAGAAGCCGAAGGAGTTCACCGACGCCGTGGCGCCGTTCATCGCGTCCCTCATC TCACAGCCGTGA
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  • Fasta :-

    MQRGANVRPIKLAQKVFSAKTVCPTAASQLYVAHGLLGNSSNWATASRHLVEHPALKDKL RRAIPVDMRNHGSSAHSSDHTNAALASDLEALVLREQQELAHTFRDPASCTTRNAILIGH SMGGLAVMGMLLRRANEDRLLTSWADHCDDAGSAPSYGAWPAEHRRQCIDGMRHVNESFG FASSQPIAEVLFNNRGASSSPSTDSGNASRIPLLGRVAGAIIVDVTPTMRLGEQRSGADN VKEALERMTQVRLDEIHSYKDAAAELLRVGMAEQEMRDFVATNIVLDSKDKSKPAQWRCN LPVLASDYGSFQPSITSWFTSSATTTGQASSAAAPRLCTLPVMFVFGGQSPYNEPDHRQR ISRFFSNATQVEVAGAGHFLHYEKPKEFTDAVAPFIASLISQP

    No Results
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IDSitePeptideScoreMethod
LmxM.13.1140258 SDEIHSYKDA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India