LmxM.15.1530 | presenilin-like aspartic peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.15.1530OTHER0.9998610.0000120.000127
No Results

  • Fasta :-

    >LmxM.15.1530 MSTRPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNNRAPPLPVMVNEN DADTVGEKFVYSLVAALIVVGCVVAATVATVVLYYFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWALLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPAFVYSSAHSIAPITQPAT ASSARVPATAAESFMWTVQHAAPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFVSHHLLVL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/165 Sequence name : 165 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 4.462 CoefTot : 0.238 ChDiff : 0 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.529 2.806 0.580 0.861 MesoH : 1.648 1.733 0.194 0.693 MuHd_075 : 33.646 19.465 7.513 6.634 MuHd_095 : 19.056 4.774 3.679 3.540 MuHd_100 : 26.268 7.254 5.306 5.016 MuHd_105 : 31.484 11.349 6.847 6.307 Hmax_075 : 3.237 10.325 0.016 2.950 Hmax_095 : 1.400 6.562 -0.269 1.907 Hmax_100 : 0.600 8.300 -0.188 2.160 Hmax_105 : 11.667 9.217 1.831 3.582 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6280 0.3720 DFMC : 0.6621 0.3379
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 LmxM.15.1530 MSTRPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNNRAPPLPVMVNENDADTVGEKFVYSLVAALIVV 80 GCVVAATVATVVLYYFHLQFVLYGWLAFSAVSMFFMLLWIWLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPT 160 VTQVYLVIASILTAWSLTALPEWSTWALLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPAFVYSSAHSIAPITQPAT 240 ASSARVPATAAESFMWTVQHAAPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGMLGTLLSLLLFRNSLRALPAL 320 PCSIFLSTVVFVLCRLIVESLSSFVSHHLLVL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.15.1530 4 ---MSTR|PL 0.082 . LmxM.15.1530 11 PLLDDAR|LS 0.078 . LmxM.15.1530 14 DDARLSR|GV 0.458 . LmxM.15.1530 19 SRGVGIR|FV 0.233 . LmxM.15.1530 49 PIYVNNR|AP 0.068 . LmxM.15.1530 68 ADTVGEK|FV 0.071 . LmxM.15.1530 209 QQGPLHR|LI 0.089 . LmxM.15.1530 212 PLHRLIK|IA 0.129 . LmxM.15.1530 217 IKIAQER|DE 0.084 . LmxM.15.1530 245 ATASSAR|VP 0.095 . LmxM.15.1530 265 QHAAPFK|LG 0.057 . LmxM.15.1530 280 YSLLVGR|AS 0.098 . LmxM.15.1530 311 LSLLLFR|NS 0.082 . LmxM.15.1530 315 LFRNSLR|AL 0.089 . LmxM.15.1530 335 VVFVLCR|LI 0.084 . ____________________________^_________________

  • Fasta :-

    >LmxM.15.1530 ATGTCAACTAGGCCTCTTTTAGACGACGCACGCCTCTCACGTGGTGTGGGTATCCGGTTT GTGTCGCTTGTCGTACCTGTAACTGTCACCATGTTGGCCGTGGTATGGAGCCTCTCGTGC CTCTCGCCAATCTACGTGAACAACCGGGCGCCGCCTCTGCCGGTGATGGTAAACGAGAAT GACGCGGACACGGTTGGCGAGAAGTTTGTGTACTCACTGGTGGCGGCCCTGATTGTCGTT GGATGCGTCGTGGCCGCAACGGTTGCAACTGTGGTGCTCTATTACTTTCATCTCCAGTTT GTATTGTATGGCTGGCTGGCGTTTTCGGCAGTGTCAATGTTTTTTATGTTGCTGTGGATT TGGCTGGACTTGTTCTGCACATATTTCCAAATCCCTTACAACGTCATTTCGATGGGCATC TTTGTGTGGAACTTCGGGGTGGTGGGTCTCATCGCCCTCTTTTACTATTCTCACCCTACT GTGACGCAGGTGTATTTGGTCATCGCCTCCATCTTGACTGCGTGGTCGCTGACGGCGCTG CCGGAATGGTCGACGTGGGCGTTGCTGATCTGCATCGCCACGTACGACATTCTTGCAGTT CTCTGGCAGCAGGGGCCACTGCATCGACTAATCAAGATAGCTCAAGAACGCGACGAGCCG ATTCCAGCATTTGTCTACAGCAGCGCACACAGCATCGCTCCGATTACACAGCCCGCAACA GCGAGCTCGGCGCGTGTGCCGGCAACGGCAGCTGAGTCTTTCATGTGGACGGTGCAACAC GCCGCTCCGTTCAAGCTGGGCCTTGGGGACTTTATCTTTTACAGCCTTCTCGTTGGTCGT GCCTCATTTTCCGGCTTTGTATCGTGGGGTTTCTGTATGGTGAGCATCCTGGCGGGCATG CTGGGCACGCTGCTGTCCTTGCTGCTTTTCCGAAACTCGCTGCGCGCGCTGCCGGCTCTG CCGTGCTCTATTTTTCTCTCTACTGTCGTCTTCGTGCTCTGTAGACTAATTGTGGAGTCG CTGAGCTCCTTTGTGAGTCATCACCTGTTGGTGCTCTAA
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  • Fasta :-

    MSTRPLLDDARLSRGVGIRFVSLVVPVTVTMLAVVWSLSCLSPIYVNNRAPPLPVMVNEN DADTVGEKFVYSLVAALIVVGCVVAATVATVVLYYFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWALLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPAFVYSSAHSIAPITQPAT ASSARVPATAAESFMWTVQHAAPFKLGLGDFIFYSLLVGRASFSGFVSWGFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFVSHHLLVL

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India