LmxM.16.0290 | proteasome 26S non-ATPase subunit 9, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.16.0290OTHER0.9999900.0000060.000005
No Results

  • Fasta :-

    >LmxM.16.0290 MSSRSIEDIVEIEDYRAPAVDSTITDMDKEAIRAELHCLDAQKAALEAKLTEALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRALNEKIYSLLNELHRQTHEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSQLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGAVTQTELIAEGLQALARETFTHEGAPIVVWARKPGELQDDPSELVLVPQRWQGPGL LGCALDRVGDETV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/640 Sequence name : 640 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.874 CoefTot : 0.471 ChDiff : -12 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.724 0.676 -0.072 0.395 MesoH : -0.665 0.258 -0.407 0.205 MuHd_075 : 17.524 10.355 4.334 2.770 MuHd_095 : 29.842 18.515 7.272 6.056 MuHd_100 : 26.287 18.469 7.439 4.703 MuHd_105 : 26.726 17.524 7.998 4.192 Hmax_075 : 0.933 5.833 -1.143 2.893 Hmax_095 : 5.950 10.325 0.338 3.553 Hmax_100 : 3.400 9.900 0.250 3.420 Hmax_105 : 0.900 8.633 -0.086 2.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4171 0.5829 DFMC : 0.4386 0.5614 This protein is probably imported in chloroplast. f(Ser) = 0.5000 f(Arg) = 0.1667 CMi = 1.64835 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 LmxM.16.0290 MSSRSIEDIVEIEDYRAPAVDSTITDMDKEAIRAELHCLDAQKAALEAKLTEALQYLASTPVGLRGRLLDDEGFPRNDCD 80 LYAVRTARNTADSTRNDLRALNEKIYSLLNELHRQTHEEAQLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSQLKPCLVV 160 AKVDANSPAEEAGLSVGMQILQYGAVTQTELIAEGLQALARETFTHEGAPIVVWARKPGELQDDPSELVLVPQRWQGPGL 240 LGCALDRVGDETV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.16.0290 4 ---MSSR|SI 0.225 . LmxM.16.0290 16 VEIEDYR|AP 0.066 . LmxM.16.0290 29 TITDMDK|EA 0.071 . LmxM.16.0290 33 MDKEAIR|AE 0.086 . LmxM.16.0290 43 HCLDAQK|AA 0.067 . LmxM.16.0290 49 KAALEAK|LT 0.079 . LmxM.16.0290 65 STPVGLR|GR 0.062 . LmxM.16.0290 67 PVGLRGR|LL 0.095 . LmxM.16.0290 76 DDEGFPR|ND 0.082 . LmxM.16.0290 85 CDLYAVR|TA 0.077 . LmxM.16.0290 88 YAVRTAR|NT 0.300 . LmxM.16.0290 95 NTADSTR|ND 0.089 . LmxM.16.0290 99 STRNDLR|AL 0.111 . LmxM.16.0290 104 LRALNEK|IY 0.066 . LmxM.16.0290 114 LLNELHR|QT 0.099 . LmxM.16.0290 131 VQDAAAR|RQ 0.075 . LmxM.16.0290 132 QDAAARR|QR 0.124 . LmxM.16.0290 134 AAARRQR|QA 0.394 . LmxM.16.0290 140 RQAAAEK|RA 0.064 . LmxM.16.0290 141 QAAAEKR|AQ 0.233 . LmxM.16.0290 144 AEKRAQR|MA 0.445 . LmxM.16.0290 150 RMAEVQR|VS 0.080 . LmxM.16.0290 155 QRVSQLK|PC 0.065 . LmxM.16.0290 162 PCLVVAK|VD 0.060 . LmxM.16.0290 201 GLQALAR|ET 0.129 . LmxM.16.0290 216 PIVVWAR|KP 0.098 . LmxM.16.0290 217 IVVWARK|PG 0.077 . LmxM.16.0290 234 LVLVPQR|WQ 0.106 . LmxM.16.0290 247 LGCALDR|VG 0.073 . ____________________________^_________________

  • Fasta :-

    >LmxM.16.0290 ATGAGCAGTCGCAGCATCGAGGACATCGTCGAGATCGAGGACTACCGCGCCCCCGCGGTC GACTCCACCATCACCGACATGGACAAGGAGGCCATCCGCGCAGAGTTGCATTGCCTGGAT GCACAGAAGGCGGCCCTCGAGGCGAAGCTGACGGAGGCGCTTCAGTATCTCGCATCGACC CCTGTTGGGCTCCGCGGCCGCTTGCTTGACGATGAGGGGTTCCCACGAAACGACTGCGAC CTGTACGCGGTTCGCACGGCCCGGAACACGGCCGACTCCACACGCAACGACCTGCGCGCG CTGAACGAGAAAATCTACAGCCTTCTCAACGAGCTGCACCGCCAGACGCACGAGGAGGCG CAGCTGCAGATGGTACAGGACGCCGCCGCCCGCCGGCAACGACAGGCGGCGGCGGAGAAG CGAGCGCAGCGCATGGCAGAGGTGCAGCGTGTCTCGCAGCTGAAGCCGTGTCTGGTGGTG GCGAAAGTGGACGCCAATAGCCCGGCGGAAGAGGCCGGCCTCTCTGTCGGCATGCAGATC CTGCAATACGGCGCGGTGACGCAGACGGAGCTGATTGCGGAGGGCCTGCAGGCGCTGGCG AGGGAAACATTCACCCACGAAGGGGCGCCGATTGTGGTGTGGGCGCGGAAGCCAGGCGAG CTGCAAGATGATCCGTCCGAGCTTGTACTGGTGCCGCAGCGCTGGCAGGGGCCCGGGCTG CTCGGCTGCGCCTTGGACAGAGTCGGGGACGAAACTGTGTGA
  • Download Fasta

  • Fasta :-

    MSSRSIEDIVEIEDYRAPAVDSTITDMDKEAIRAELHCLDAQKAALEAKLTEALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRALNEKIYSLLNELHRQTHEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSQLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGAVTQTELIAEGLQALARETFTHEGAPIVVWARKPGELQDDPSELVLVPQRWQGPGL LGCALDRVGDETV

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.16.0290167 SVDANSPAEE0.994unspLmxM.16.0290167 SVDANSPAEE0.994unspLmxM.16.0290167 SVDANSPAEE0.994unspLmxM.16.02905 SMSSRSIEDI0.996unspLmxM.16.029093 SNTADSTRND0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India