LmxM.18.0360 | cysteine peptidase, Clan CD, family C13, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.18.0360SP0.0041380.9957490.000113CS pos: 25-26. AAA-AS. Pr: 0.2730
No Results

  • Fasta :-

    >LmxM.18.0360 MTSPTRCIATALIVFAFLVLTAAAAASAPLGATGKGQSNNWAVIVSSSRYLFNYRHTANA LTMYHLLRQHGIDDDHILLFLSDSFACDPRNVYPAEIFSQPPGAHDADGRASMNLYGCSA QVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDNTSNIIIYVAGHGAKSYFKFQDTEF LSSSDISETLTMMHQQRRYGRVVFLADTCHAIALCEHVEAPNVVCLAASDAESESYSCQY DEQLGTHMVSFWMNEMYLLLNGTSCSNPLTRRIGDDAVSVLHQSWYNFNYHPYRVEASRN RSKPAHRDAVNDPTALREWIVADFVCSQVSAAVPVDVRYDLE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/862 Sequence name : 862 Sequence length : 342 VALUES OF COMPUTED PARAMETERS Coef20 : 5.090 CoefTot : 0.368 ChDiff : -11 ZoneTo : 72 KR : 5 DE : 0 CleavSite : 70 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.329 2.618 0.534 0.842 MesoH : 0.086 0.551 -0.229 0.283 MuHd_075 : 34.894 23.816 10.657 7.596 MuHd_095 : 16.037 13.843 5.018 5.011 MuHd_100 : 19.767 12.594 6.236 4.754 MuHd_105 : 26.988 20.024 8.590 6.458 Hmax_075 : 14.900 14.100 2.834 5.080 Hmax_095 : 18.700 23.000 0.760 7.440 Hmax_100 : 10.600 22.700 0.539 6.640 Hmax_105 : 9.363 11.800 1.321 3.946 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1191 0.8809 DFMC : 0.0808 0.9192 This protein is probably imported in mitochondria. f(Ser) = 0.0833 f(Arg) = 0.0556 CMi = 0.56391 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 342 LmxM.18.0360 MTSPTRCIATALIVFAFLVLTAAAAASAPLGATGKGQSNNWAVIVSSSRYLFNYRHTANALTMYHLLRQHGIDDDHILLF 80 LSDSFACDPRNVYPAEIFSQPPGAHDADGRASMNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDNTSNI 160 IIYVAGHGAKSYFKFQDTEFLSSSDISETLTMMHQQRRYGRVVFLADTCHAIALCEHVEAPNVVCLAASDAESESYSCQY 240 DEQLGTHMVSFWMNEMYLLLNGTSCSNPLTRRIGDDAVSVLHQSWYNFNYHPYRVEASRNRSKPAHRDAVNDPTALREWI 320 VADFVCSQVSAAVPVDVRYDLE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.18.0360 6 -MTSPTR|CI 0.090 . LmxM.18.0360 35 PLGATGK|GQ 0.066 . LmxM.18.0360 49 VIVSSSR|YL 0.100 . LmxM.18.0360 55 RYLFNYR|HT 0.098 . LmxM.18.0360 68 TMYHLLR|QH 0.114 . LmxM.18.0360 90 SFACDPR|NV 0.163 . LmxM.18.0360 110 AHDADGR|AS 0.085 . LmxM.18.0360 132 GSDVDVR|RF 0.075 . LmxM.18.0360 133 SDVDVRR|FL 0.216 . LmxM.18.0360 141 LSVLQGR|YD 0.114 . LmxM.18.0360 150 ENTPPTR|RL 0.069 . LmxM.18.0360 151 NTPPTRR|LL 0.120 . LmxM.18.0360 170 VAGHGAK|SY 0.106 . LmxM.18.0360 174 GAKSYFK|FQ 0.078 . LmxM.18.0360 197 TMMHQQR|RY 0.138 . LmxM.18.0360 198 MMHQQRR|YG 0.188 . LmxM.18.0360 201 QQRRYGR|VV 0.380 . LmxM.18.0360 271 CSNPLTR|RI 0.134 . LmxM.18.0360 272 SNPLTRR|IG 0.134 . LmxM.18.0360 294 FNYHPYR|VE 0.076 . LmxM.18.0360 299 YRVEASR|NR 0.087 . LmxM.18.0360 301 VEASRNR|SK 0.128 . LmxM.18.0360 303 ASRNRSK|PA 0.070 . LmxM.18.0360 307 RSKPAHR|DA 0.119 . LmxM.18.0360 317 NDPTALR|EW 0.075 . LmxM.18.0360 338 AVPVDVR|YD 0.071 . ____________________________^_________________

  • Fasta :-

    >LmxM.18.0360 ATGACGTCGCCAACAAGGTGTATCGCGACGGCATTGATCGTCTTTGCTTTTCTTGTTCTC ACCGCCGCGGCCGCCGCGTCTGCGCCGCTGGGGGCGACAGGCAAGGGCCAGAGCAACAAC TGGGCTGTCATTGTCTCCTCCTCGCGATACCTCTTCAACTACCGCCACACCGCCAATGCG CTTACCATGTACCACCTCTTGCGTCAGCACGGCATTGACGACGACCATATTCTTCTCTTT TTGAGTGACAGCTTCGCCTGCGACCCGCGAAATGTGTACCCTGCGGAGATTTTTTCGCAG CCCCCCGGAGCACACGACGCGGATGGGCGCGCTAGCATGAATCTGTACGGCTGCAGCGCG CAGGTGGACTACGCGGGCAGCGACGTGGACGTGCGCCGTTTTCTAAGTGTGTTGCAGGGC CGTTATGACGAGAACACGCCGCCCACGCGGCGACTCCTTTCGGACAACACATCGAACATC ATCATCTACGTCGCGGGGCACGGCGCCAAGTCGTACTTCAAGTTTCAGGACACGGAGTTT CTGAGCTCGTCGGACATCTCGGAGACGCTTACGATGATGCACCAGCAGCGGCGGTACGGT CGCGTTGTTTTCCTGGCAGATACATGCCATGCGATTGCGCTGTGCGAGCATGTAGAGGCG CCGAACGTGGTATGTCTCGCCGCCTCAGATGCCGAGTCGGAGAGCTACTCGTGCCAGTAC GATGAACAGCTTGGCACTCATATGGTCTCCTTTTGGATGAATGAGATGTACTTGTTGCTG AACGGCACGAGTTGCAGCAACCCGCTCACTCGCCGCATCGGCGACGATGCAGTGTCCGTG CTGCATCAATCGTGGTACAACTTCAATTATCACCCCTACCGCGTGGAGGCGAGCCGAAAC CGCTCGAAGCCAGCGCACCGCGACGCCGTGAACGACCCGACGGCTCTGAGAGAATGGATT GTAGCCGACTTTGTGTGCAGCCAGGTGTCCGCAGCGGTACCAGTGGACGTCCGCTACGAC CTCGAGTAG
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  • Fasta :-

    MTSPTRCIATALIVFAFLVLTAAAAASAPLGATGKGQSNNWAVIVSSSRYLFNYRHTANA LTMYHLLRQHGIDDDHILLFLSDSFACDPRNVYPAEIFSQPPGAHDADGRASMNLYGCSA QVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDNTSNIIIYVAGHGAKSYFKFQDTEF LSSSDISETLTMMHQQRRYGRVVFLADTCHAIALCEHVEAPNVVCLAASDAESESYSCQY DEQLGTHMVSFWMNEMYLLLNGTSCSNPLTRRIGDDAVSVLHQSWYNFNYHPYRVEASRN RSKPAHRDAVNDPTALREWIVADFVCSQVSAAVPVDVRYDLE

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India