LmxM.18.0450 | serine peptidase, Clan SC, Family S10

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004185      

  • Computed_GO_Functions:  serine-type carboxypeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.18.0450SP0.0001530.9998420.000005CS pos: 29-30. VHA-ST. Pr: 0.8358
No Results

  • Fasta :-

    >LmxM.18.0450 MASSLSTTALLVALLVAMVPLACVPTVHASTPHHGYAGCDPSVVQSSGYIDIPGVNNTLK HYFYWLFGPRKWSNDGREPPVIMWMTGGPGCSSTMALLTELGPCMMNETSGELYYNTYGW NDEAYLLFVDQPTGVGYSYGDKFNYVHNQSEVAEDMYNFLQLFARRFTSPSIIGTNDFYI IGESYAGHYVPAVSYRIVMGNERGDGLHINLKGIAVGNGITDPYTQLPFNAETAYYWCKE KLGFPCVTEKAYEEMISLLPACLEKTKKCNEGPDDSDVSCSVSTALWAQYVDYYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPSVRASLGVSAEAQWSTCNSEVSVLFERDYMRNFN FTFPLMLDLGIRVLIYAGDMDFICNWLGNEAWVKALQWFGTDGFNSAPNVEFAVSGRWAG LERSYGGLSFVRIYDAGHMVPMDQPEVALFMVRRFLHGQNLA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/129 Sequence name : 129 Sequence length : 462 VALUES OF COMPUTED PARAMETERS Coef20 : 4.974 CoefTot : 0.034 ChDiff : -17 ZoneTo : 39 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.188 2.653 0.499 0.797 MesoH : 0.249 0.445 -0.201 0.321 MuHd_075 : 9.158 10.510 3.970 2.973 MuHd_095 : 9.214 13.147 5.183 2.149 MuHd_100 : 6.772 9.556 4.931 2.087 MuHd_105 : 7.496 11.068 4.376 2.822 Hmax_075 : 9.700 24.733 2.141 6.240 Hmax_095 : 17.200 22.925 4.156 6.134 Hmax_100 : 14.400 17.400 4.390 6.260 Hmax_105 : 16.333 21.000 4.322 6.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9923 0.0077 DFMC : 0.9865 0.0135
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 462 LmxM.18.0450 MASSLSTTALLVALLVAMVPLACVPTVHASTPHHGYAGCDPSVVQSSGYIDIPGVNNTLKHYFYWLFGPRKWSNDGREPP 80 VIMWMTGGPGCSSTMALLTELGPCMMNETSGELYYNTYGWNDEAYLLFVDQPTGVGYSYGDKFNYVHNQSEVAEDMYNFL 160 QLFARRFTSPSIIGTNDFYIIGESYAGHYVPAVSYRIVMGNERGDGLHINLKGIAVGNGITDPYTQLPFNAETAYYWCKE 240 KLGFPCVTEKAYEEMISLLPACLEKTKKCNEGPDDSDVSCSVSTALWAQYVDYYYATGRNSYDIRKQCIGDLCYPMQNTI 320 DFYHKPSVRASLGVSAEAQWSTCNSEVSVLFERDYMRNFNFTFPLMLDLGIRVLIYAGDMDFICNWLGNEAWVKALQWFG 400 TDGFNSAPNVEFAVSGRWAGLERSYGGLSFVRIYDAGHMVPMDQPEVALFMVRRFLHGQNLA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.18.0450 60 GVNNTLK|HY 0.076 . LmxM.18.0450 70 YWLFGPR|KW 0.081 . LmxM.18.0450 71 WLFGPRK|WS 0.090 . LmxM.18.0450 77 KWSNDGR|EP 0.113 . LmxM.18.0450 142 GYSYGDK|FN 0.069 . LmxM.18.0450 165 FLQLFAR|RF 0.075 . LmxM.18.0450 166 LQLFARR|FT 0.188 . LmxM.18.0450 196 VPAVSYR|IV 0.303 . LmxM.18.0450 203 IVMGNER|GD 0.087 . LmxM.18.0450 212 GLHINLK|GI 0.072 . LmxM.18.0450 239 TAYYWCK|EK 0.062 . LmxM.18.0450 241 YYWCKEK|LG 0.061 . LmxM.18.0450 250 FPCVTEK|AY 0.072 . LmxM.18.0450 265 LPACLEK|TK 0.061 . LmxM.18.0450 267 ACLEKTK|KC 0.064 . LmxM.18.0450 268 CLEKTKK|CN 0.099 . LmxM.18.0450 299 YYYATGR|NS 0.098 . LmxM.18.0450 305 RNSYDIR|KQ 0.107 . LmxM.18.0450 306 NSYDIRK|QC 0.079 . LmxM.18.0450 325 TIDFYHK|PS 0.064 . LmxM.18.0450 329 YHKPSVR|AS 0.079 . LmxM.18.0450 353 VSVLFER|DY 0.097 . LmxM.18.0450 357 FERDYMR|NF 0.084 . LmxM.18.0450 372 MLDLGIR|VL 0.084 . LmxM.18.0450 394 GNEAWVK|AL 0.070 . LmxM.18.0450 417 EFAVSGR|WA 0.144 . LmxM.18.0450 423 RWAGLER|SY 0.139 . LmxM.18.0450 432 GGLSFVR|IY 0.093 . LmxM.18.0450 453 VALFMVR|RF 0.073 . LmxM.18.0450 454 ALFMVRR|FL 0.260 . ____________________________^_________________

  • Fasta :-

    >LmxM.18.0450 ATGGCGTCTTCTCTATCGACCACAGCGCTGCTAGTGGCGCTCCTCGTCGCGATGGTGCCA TTGGCGTGCGTGCCCACCGTGCACGCGAGTACGCCACATCACGGATACGCGGGCTGCGAC CCATCGGTGGTGCAGTCGAGCGGCTATATCGACATTCCCGGCGTCAACAACACGCTGAAG CATTACTTCTACTGGCTGTTCGGCCCGCGTAAGTGGTCGAACGATGGCCGAGAGCCGCCG GTGATTATGTGGATGACGGGCGGCCCCGGGTGCAGCTCCACCATGGCCTTGCTCACGGAG CTTGGCCCCTGTATGATGAATGAGACGTCTGGTGAGCTCTACTACAACACTTACGGGTGG AACGACGAGGCCTACCTGCTGTTCGTGGACCAGCCGACCGGTGTGGGCTACTCGTATGGC GATAAGTTCAACTATGTGCACAATCAAAGCGAGGTTGCGGAGGACATGTATAACTTTCTG CAGCTGTTTGCGCGGCGCTTCACGTCGCCGTCGATTATCGGCACGAACGACTTCTACATC ATTGGTGAGAGCTATGCTGGGCACTATGTTCCTGCAGTGAGCTACCGTATCGTGATGGGC AACGAGCGCGGTGACGGCCTGCACATCAATCTTAAGGGCATCGCCGTCGGCAACGGCATC ACGGACCCGTACACGCAGCTCCCCTTCAACGCCGAAACCGCTTACTACTGGTGCAAGGAG AAGCTGGGGTTTCCCTGCGTTACGGAGAAGGCATACGAGGAGATGATCTCGCTGCTGCCA GCTTGTTTGGAGAAGACGAAGAAGTGCAACGAGGGGCCCGACGACTCGGACGTGTCGTGC AGCGTGTCCACCGCGCTCTGGGCCCAGTACGTGGATTACTACTATGCAACCGGCCGCAAC AGCTATGATATCCGCAAGCAGTGTATCGGCGACTTGTGCTACCCGATGCAGAATACTATC GACTTTTACCATAAGCCAAGCGTCCGAGCATCGCTGGGCGTTAGCGCTGAGGCGCAGTGG TCGACGTGTAACAGTGAAGTCAGCGTGCTCTTCGAGAGGGACTACATGCGCAACTTTAAC TTTACCTTCCCACTCATGTTGGATCTGGGCATTCGTGTGTTGATCTACGCCGGTGATATG GACTTCATATGTAACTGGCTGGGCAACGAGGCGTGGGTCAAGGCACTGCAGTGGTTTGGT ACGGACGGCTTCAATTCTGCGCCAAATGTGGAGTTCGCTGTCAGCGGTCGCTGGGCTGGT CTGGAGCGCAGTTACGGAGGCCTCAGCTTTGTGCGCATCTACGATGCTGGCCACATGGTG CCGATGGATCAGCCGGAGGTGGCGTTGTTCATGGTTCGCCGCTTCCTGCACGGCCAGAAT TTGGCGTAG
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  • Fasta :-

    MASSLSTTALLVALLVAMVPLACVPTVHASTPHHGYAGCDPSVVQSSGYIDIPGVNNTLK HYFYWLFGPRKWSNDGREPPVIMWMTGGPGCSSTMALLTELGPCMMNETSGELYYNTYGW NDEAYLLFVDQPTGVGYSYGDKFNYVHNQSEVAEDMYNFLQLFARRFTSPSIIGTNDFYI IGESYAGHYVPAVSYRIVMGNERGDGLHINLKGIAVGNGITDPYTQLPFNAETAYYWCKE KLGFPCVTEKAYEEMISLLPACLEKTKKCNEGPDDSDVSCSVSTALWAQYVDYYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPSVRASLGVSAEAQWSTCNSEVSVLFERDYMRNFN FTFPLMLDLGIRVLIYAGDMDFICNWLGNEAWVKALQWFGTDGFNSAPNVEFAVSGRWAG LERSYGGLSFVRIYDAGHMVPMDQPEVALFMVRRFLHGQNLA

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India