LmxM.20.1200 | cysteine peptidase, Clan CA, family C2, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.20.1200OTHER0.9999350.0000380.000027
No Results

  • Fasta :-

    >LmxM.20.1200 MLDEFREDSVEPLPMDASKSPSTPWVNWGPSIDGEATPCFQDGFLYRIIDSKKKVWALYN DTFVYEMYATFIFCPVSNMEPITASLSASESGGEVDDKNRVVARVEGNELTISMAVYPME TIEFVRGDMSKYSCHFDGKPLSKEYLQRETALANAELEKNKVTLARFIHTSVDPEDVLTL CKKHRLGFIDPSFPPGQHSLDGDRGLIAPSGWRRPVGYLPLGLKGQIRLFRRRVTPSAPQ RGELGNSWVVSAMAALAEHPDYIKEMFRHPFSSEETQRDEAVGAYRVWLNKDGLWQSVLV DSYLPVVGKQQRYARSANEPCEMWVSYLEKAYAKRYHSYSNIASGDPLFGIRDFTGFPTS RLDVRFRECVTDPVKSDMFFLRMVRDYENRHLVLLSTPGTSDPRSAHSTYKEKGIFVGYA YAVLEARAIEFPTLRRKKVPPLRLLRLRNAWEAAAKWSGKWSDDSPMWQTYPEACVAFPQ HSGNDGTFIMEWSEVLEIFVGCGVVFNHFGYVDYRVPFEFRGSVPDLCLEIHVTEPTTLT LILSQPDTKGTVRESEDYNPVMISIAGASSTPTTPFSQDGSKRSSGTSSHSMMTASTQLM ARDYSLLVNSSADAETPSKSFTFLQGRDISAIYTFIPEQSPYLVVPRLLVQQSSGSNGTR PSSAAVTSASNSAVTWPCVLGVLSQLAFTPNGQAHVRLRKLPANSLVFDNYLSFANDSVE VEKTFYVKRSGTSMTHRSASELQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/390 Sequence name : 390 Sequence length : 743 VALUES OF COMPUTED PARAMETERS Coef20 : 3.311 CoefTot : 0.122 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.429 0.208 0.622 MesoH : 0.105 0.380 -0.207 0.289 MuHd_075 : 26.735 10.659 6.014 2.891 MuHd_095 : 30.147 20.189 8.441 4.596 MuHd_100 : 19.686 14.843 6.027 2.979 MuHd_105 : 16.804 8.000 3.969 1.911 Hmax_075 : 15.750 9.800 0.992 4.107 Hmax_095 : 4.812 11.375 -0.062 3.238 Hmax_100 : 3.900 6.400 -1.064 3.080 Hmax_105 : 4.500 4.500 -1.551 2.620 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9173 0.0827 DFMC : 0.9227 0.0773
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 743 LmxM.20.1200 MLDEFREDSVEPLPMDASKSPSTPWVNWGPSIDGEATPCFQDGFLYRIIDSKKKVWALYNDTFVYEMYATFIFCPVSNME 80 PITASLSASESGGEVDDKNRVVARVEGNELTISMAVYPMETIEFVRGDMSKYSCHFDGKPLSKEYLQRETALANAELEKN 160 KVTLARFIHTSVDPEDVLTLCKKHRLGFIDPSFPPGQHSLDGDRGLIAPSGWRRPVGYLPLGLKGQIRLFRRRVTPSAPQ 240 RGELGNSWVVSAMAALAEHPDYIKEMFRHPFSSEETQRDEAVGAYRVWLNKDGLWQSVLVDSYLPVVGKQQRYARSANEP 320 CEMWVSYLEKAYAKRYHSYSNIASGDPLFGIRDFTGFPTSRLDVRFRECVTDPVKSDMFFLRMVRDYENRHLVLLSTPGT 400 SDPRSAHSTYKEKGIFVGYAYAVLEARAIEFPTLRRKKVPPLRLLRLRNAWEAAAKWSGKWSDDSPMWQTYPEACVAFPQ 480 HSGNDGTFIMEWSEVLEIFVGCGVVFNHFGYVDYRVPFEFRGSVPDLCLEIHVTEPTTLTLILSQPDTKGTVRESEDYNP 560 VMISIAGASSTPTTPFSQDGSKRSSGTSSHSMMTASTQLMARDYSLLVNSSADAETPSKSFTFLQGRDISAIYTFIPEQS 640 PYLVVPRLLVQQSSGSNGTRPSSAAVTSASNSAVTWPCVLGVLSQLAFTPNGQAHVRLRKLPANSLVFDNYLSFANDSVE 720 VEKTFYVKRSGTSMTHRSASELQ 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..........................................................................P..... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ......................P......................................................... 640 ................................................................................ 720 ....................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmxM.20.1200 6 -MLDEFR|ED 0.074 . LmxM.20.1200 19 LPMDASK|SP 0.088 . LmxM.20.1200 47 QDGFLYR|II 0.113 . LmxM.20.1200 52 YRIIDSK|KK 0.063 . LmxM.20.1200 53 RIIDSKK|KV 0.138 . LmxM.20.1200 54 IIDSKKK|VW 0.089 . LmxM.20.1200 98 GGEVDDK|NR 0.060 . LmxM.20.1200 100 EVDDKNR|VV 0.119 . LmxM.20.1200 104 KNRVVAR|VE 0.163 . LmxM.20.1200 126 ETIEFVR|GD 0.083 . LmxM.20.1200 131 VRGDMSK|YS 0.074 . LmxM.20.1200 139 SCHFDGK|PL 0.078 . LmxM.20.1200 143 DGKPLSK|EY 0.065 . LmxM.20.1200 148 SKEYLQR|ET 0.094 . LmxM.20.1200 159 ANAELEK|NK 0.058 . LmxM.20.1200 161 AELEKNK|VT 0.061 . LmxM.20.1200 166 NKVTLAR|FI 0.168 . LmxM.20.1200 182 DVLTLCK|KH 0.053 . LmxM.20.1200 183 VLTLCKK|HR 0.076 . LmxM.20.1200 185 TLCKKHR|LG 0.097 . LmxM.20.1200 204 HSLDGDR|GL 0.076 . LmxM.20.1200 213 IAPSGWR|RP 0.065 . LmxM.20.1200 214 APSGWRR|PV 0.350 . LmxM.20.1200 224 YLPLGLK|GQ 0.053 . LmxM.20.1200 228 GLKGQIR|LF 0.086 . LmxM.20.1200 231 GQIRLFR|RR 0.124 . LmxM.20.1200 232 QIRLFRR|RV 0.261 . LmxM.20.1200 233 IRLFRRR|VT 0.120 . LmxM.20.1200 241 TPSAPQR|GE 0.102 . LmxM.20.1200 264 EHPDYIK|EM 0.057 . LmxM.20.1200 268 YIKEMFR|HP 0.097 . LmxM.20.1200 278 SSEETQR|DE 0.102 . LmxM.20.1200 286 EAVGAYR|VW 0.075 . LmxM.20.1200 291 YRVWLNK|DG 0.063 . LmxM.20.1200 309 YLPVVGK|QQ 0.064 . LmxM.20.1200 312 VVGKQQR|YA 0.117 . LmxM.20.1200 315 KQQRYAR|SA 0.548 *ProP* LmxM.20.1200 330 WVSYLEK|AY 0.077 . LmxM.20.1200 334 LEKAYAK|RY 0.060 . LmxM.20.1200 335 EKAYAKR|YH 0.218 . LmxM.20.1200 352 DPLFGIR|DF 0.092 . LmxM.20.1200 361 TGFPTSR|LD 0.074 . LmxM.20.1200 365 TSRLDVR|FR 0.119 . LmxM.20.1200 367 RLDVRFR|EC 0.079 . LmxM.20.1200 375 CVTDPVK|SD 0.068 . LmxM.20.1200 382 SDMFFLR|MV 0.256 . LmxM.20.1200 385 FFLRMVR|DY 0.163 . LmxM.20.1200 390 VRDYENR|HL 0.073 . LmxM.20.1200 404 PGTSDPR|SA 0.112 . LmxM.20.1200 411 SAHSTYK|EK 0.078 . LmxM.20.1200 413 HSTYKEK|GI 0.078 . LmxM.20.1200 427 YAVLEAR|AI 0.082 . LmxM.20.1200 435 IEFPTLR|RK 0.061 . LmxM.20.1200 436 EFPTLRR|KK 0.082 . LmxM.20.1200 437 FPTLRRK|KV 0.086 . LmxM.20.1200 438 PTLRRKK|VP 0.127 . LmxM.20.1200 443 KKVPPLR|LL 0.077 . LmxM.20.1200 446 PPLRLLR|LR 0.157 . LmxM.20.1200 448 LRLLRLR|NA 0.100 . LmxM.20.1200 456 AWEAAAK|WS 0.077 . LmxM.20.1200 460 AAKWSGK|WS 0.089 . LmxM.20.1200 515 FGYVDYR|VP 0.079 . LmxM.20.1200 521 RVPFEFR|GS 0.084 . LmxM.20.1200 549 LSQPDTK|GT 0.066 . LmxM.20.1200 553 DTKGTVR|ES 0.095 . LmxM.20.1200 582 FSQDGSK|RS 0.060 . LmxM.20.1200 583 SQDGSKR|SS 0.522 *ProP* LmxM.20.1200 602 STQLMAR|DY 0.121 . LmxM.20.1200 619 DAETPSK|SF 0.065 . LmxM.20.1200 627 FTFLQGR|DI 0.140 . LmxM.20.1200 647 PYLVVPR|LL 0.086 . LmxM.20.1200 660 SGSNGTR|PS 0.141 . LmxM.20.1200 697 NGQAHVR|LR 0.070 . LmxM.20.1200 699 QAHVRLR|KL 0.093 . LmxM.20.1200 700 AHVRLRK|LP 0.128 . LmxM.20.1200 723 DSVEVEK|TF 0.066 . LmxM.20.1200 728 EKTFYVK|RS 0.070 . LmxM.20.1200 729 KTFYVKR|SG 0.260 . LmxM.20.1200 737 GTSMTHR|SA 0.280 . ____________________________^_________________

  • Fasta :-

    >LmxM.20.1200 ATGCTCGATGAGTTTCGTGAGGACTCAGTCGAGCCGCTACCTATGGATGCCAGTAAGAGC CCATCAACGCCATGGGTGAACTGGGGGCCGTCCATCGACGGCGAGGCTACCCCGTGCTTC CAGGACGGTTTTCTCTATCGGATTATTGATTCCAAGAAGAAAGTCTGGGCGCTGTATAAT GACACGTTTGTCTACGAAATGTATGCCACCTTTATTTTTTGCCCTGTGTCGAACATGGAG CCCATCACCGCCTCGCTCTCTGCGTCGGAGAGCGGCGGCGAGGTGGATGACAAGAACCGC GTCGTCGCCAGGGTCGAGGGCAACGAGCTGACAATCTCCATGGCTGTCTATCCGATGGAG ACGATCGAGTTCGTCCGGGGCGACATGTCGAAGTACAGTTGTCACTTCGACGGCAAGCCG CTCTCAAAAGAGTACCTTCAACGCGAAACAGCCTTGGCAAATGCCGAGCTAGAAAAGAAC AAGGTGACGCTCGCGAGGTTCATCCACACCTCCGTGGACCCTGAGGATGTGCTGACGTTG TGCAAAAAACACCGTTTGGGGTTTATCGACCCTTCCTTCCCTCCCGGCCAGCACTCGCTT GACGGGGATCGAGGCCTGATTGCGCCGAGCGGGTGGCGGCGCCCGGTGGGATATCTGCCT CTCGGGTTGAAGGGTCAAATTCGTCTGTTTCGGCGTCGTGTAACCCCTTCTGCCCCACAG CGTGGTGAATTGGGCAATTCGTGGGTGGTGAGCGCTATGGCGGCGCTGGCGGAACACCCG GACTACATCAAGGAAATGTTTCGGCACCCCTTCAGCTCCGAAGAGACGCAGCGAGACGAG GCAGTTGGGGCGTACCGGGTTTGGCTGAACAAAGACGGTCTCTGGCAGTCGGTGCTCGTC GACAGCTATCTCCCCGTAGTGGGCAAGCAGCAGCGCTACGCCCGCAGCGCCAACGAGCCG TGCGAGATGTGGGTGTCGTATCTCGAGAAGGCGTATGCGAAGCGTTATCACAGCTACAGC AACATCGCCAGCGGCGATCCGCTCTTTGGAATTCGCGACTTCACCGGATTTCCTACGTCG CGGCTGGACGTCCGCTTTCGTGAGTGTGTCACGGACCCAGTGAAGAGCGATATGTTTTTC CTTCGCATGGTACGGGACTACGAGAACAGGCACCTTGTGTTGCTGAGCACTCCCGGCACC AGCGACCCGCGCTCTGCCCATAGCACATACAAAGAGAAGGGTATTTTTGTAGGCTACGCC TATGCAGTGCTAGAAGCTCGCGCGATTGAATTTCCGACGTTGCGGCGGAAGAAGGTACCA CCGCTGCGGCTGCTGCGGCTGCGCAACGCGTGGGAGGCGGCGGCCAAGTGGAGTGGCAAG TGGTCCGACGACTCGCCGATGTGGCAGACGTACCCGGAAGCGTGTGTTGCGTTTCCGCAG CACAGCGGGAATGACGGAACGTTCATCATGGAGTGGTCGGAGGTGCTGGAAATCTTTGTT GGCTGCGGCGTTGTGTTTAACCACTTCGGCTACGTGGACTACCGTGTCCCCTTCGAGTTC CGGGGCTCTGTGCCGGACCTGTGCCTCGAGATTCACGTGACGGAGCCGACAACATTGACG CTCATTCTGTCGCAGCCAGACACCAAGGGCACGGTGAGGGAGTCGGAGGACTACAACCCT GTCATGATCTCCATAGCGGGTGCCTCCTCCACCCCGACGACCCCGTTTTCCCAGGACGGC AGCAAGCGTAGTAGCGGGACCTCCAGTCACTCCATGATGACGGCCAGTACGCAGCTGATG GCGCGCGATTACTCTCTCCTCGTCAACTCCTCTGCGGACGCCGAGACGCCGTCAAAGAGC TTCACGTTCTTGCAGGGTCGCGACATAAGCGCCATATACACGTTCATCCCAGAGCAGTCG CCGTACCTCGTCGTACCGCGTCTGCTCGTGCAGCAGTCTAGCGGCAGCAACGGAACGAGG CCGTCCAGTGCGGCTGTGACATCGGCATCAAACAGCGCTGTGACGTGGCCATGCGTGCTC GGCGTTCTTTCACAGCTTGCCTTTACCCCAAACGGACAGGCGCATGTTCGTCTGCGCAAG TTGCCAGCGAACAGTCTCGTCTTCGACAACTACCTCAGCTTCGCCAACGACTCCGTGGAG GTCGAGAAGACCTTCTACGTGAAACGCTCCGGCACCAGTATGACGCACCGCAGCGCGTCA GAACTACAGTAG
  • Download Fasta

  • Fasta :-

    MLDEFREDSVEPLPMDASKSPSTPWVNWGPSIDGEATPCFQDGFLYRIIDSKKKVWALYN DTFVYEMYATFIFCPVSNMEPITASLSASESGGEVDDKNRVVARVEGNELTISMAVYPME TIEFVRGDMSKYSCHFDGKPLSKEYLQRETALANAELEKNKVTLARFIHTSVDPEDVLTL CKKHRLGFIDPSFPPGQHSLDGDRGLIAPSGWRRPVGYLPLGLKGQIRLFRRRVTPSAPQ RGELGNSWVVSAMAALAEHPDYIKEMFRHPFSSEETQRDEAVGAYRVWLNKDGLWQSVLV DSYLPVVGKQQRYARSANEPCEMWVSYLEKAYAKRYHSYSNIASGDPLFGIRDFTGFPTS RLDVRFRECVTDPVKSDMFFLRMVRDYENRHLVLLSTPGTSDPRSAHSTYKEKGIFVGYA YAVLEARAIEFPTLRRKKVPPLRLLRLRNAWEAAAKWSGKWSDDSPMWQTYPEACVAFPQ HSGNDGTFIMEWSEVLEIFVGCGVVFNHFGYVDYRVPFEFRGSVPDLCLEIHVTEPTTLT LILSQPDTKGTVRESEDYNPVMISIAGASSTPTTPFSQDGSKRSSGTSSHSMMTASTQLM ARDYSLLVNSSADAETPSKSFTFLQGRDISAIYTFIPEQSPYLVVPRLLVQQSSGSNGTR PSSAAVTSASNSAVTWPCVLGVLSQLAFTPNGQAHVRLRKLPANSLVFDNYLSFANDSVE VEKTFYVKRSGTSMTHRSASELQ

  • title: catalytic site
  • coordinates: S247,Y419,N449
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.20.1200272 SRHPFSSEET0.997unspLmxM.20.1200272 SRHPFSSEET0.997unspLmxM.20.1200272 SRHPFSSEET0.997unspLmxM.20.1200338 SKRYHSYSNI0.996unspLmxM.20.1200405 SSDPRSAHST0.992unspLmxM.20.1200408 SRSAHSTYKE0.994unspLmxM.20.1200523 SEFRGSVPDL0.995unspLmxM.20.1200585 SSKRSSGTSS0.997unspLmxM.20.12009 SFREDSVEPL0.992unspLmxM.20.120087 STASLSASES0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India