LmxM.21.0340 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.21.0340mTP0.2898440.0006680.709488CS pos: 24-25. NAF-ST. Pr: 0.1234
No Results

  • Fasta :-

    >LmxM.21.0340 MLRATSRLGIYEYQFGQPSLKNAFSTRIAPAAKARSPGTVQSTKLTNGVRVVSHDLDGPV TSIGVYADAGPKYDPIATPGLSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKR YLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDTMDNQLEEMRWQCPREYAIDQ LELVAFSKEPLGAPRMVPRMANDRCNHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAV GVPTYGRDECAKQYATALVTREIYEEAMRSAHGSRASSEHYGAQVFYRPYSSAGLIGYTV RGAPAEVEKMIQVASSAFPAAVDVAVVKRAAHCAHVRLLHEQVEVTRDYCDFLATSPNSV EELVQAISGVTKANVEEAMKKMVAQKPATYATGDSFTFPIVASLSHA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/861 Sequence name : 861 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 3.849 CoefTot : -0.936 ChDiff : 0 ZoneTo : 54 KR : 8 DE : 1 CleavSite : 52 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.594 0.090 0.562 MesoH : -0.651 0.329 -0.389 0.157 MuHd_075 : 41.448 26.710 11.052 8.625 MuHd_095 : 24.458 18.540 6.360 6.641 MuHd_100 : 28.502 14.169 7.320 6.699 MuHd_105 : 28.132 17.431 9.506 6.744 Hmax_075 : 15.867 11.200 0.601 4.515 Hmax_095 : 6.387 10.150 0.204 3.530 Hmax_100 : 5.500 5.500 0.141 3.250 Hmax_105 : 12.600 12.367 2.644 3.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2104 0.7896 DFMC : 0.2358 0.7642 This protein is probably imported in mitochondria. f(Ser) = 0.1111 f(Arg) = 0.0926 CMi = 0.55659 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 LmxM.21.0340 MLRATSRLGIYEYQFGQPSLKNAFSTRIAPAAKARSPGTVQSTKLTNGVRVVSHDLDGPVTSIGVYADAGPKYDPIATPG 80 LSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKRYLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDT 160 MDNQLEEMRWQCPREYAIDQLELVAFSKEPLGAPRMVPRMANDRCNHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE 240 KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAVGVPTYGRDECAKQYATALVT 320 REIYEEAMRSAHGSRASSEHYGAQVFYRPYSSAGLIGYTVRGAPAEVEKMIQVASSAFPAAVDVAVVKRAAHCAHVRLLH 400 EQVEVTRDYCDFLATSPNSVEELVQAISGVTKANVEEAMKKMVAQKPATYATGDSFTFPIVASLSHA 480 ................................................................................ 80 .........................P...................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmxM.21.0340 3 ----MLR|AT 0.095 . LmxM.21.0340 7 MLRATSR|LG 0.080 . LmxM.21.0340 21 FGQPSLK|NA 0.065 . LmxM.21.0340 27 KNAFSTR|IA 0.136 . LmxM.21.0340 33 RIAPAAK|AR 0.083 . LmxM.21.0340 35 APAAKAR|SP 0.378 . LmxM.21.0340 44 GTVQSTK|LT 0.068 . LmxM.21.0340 50 KLTNGVR|VV 0.117 . LmxM.21.0340 72 YADAGPK|YD 0.058 . LmxM.21.0340 86 GLSYVMR|FA 0.184 . LmxM.21.0340 103 SLFQIDR|TM 0.080 . LmxM.21.0340 106 QIDRTMR|ST 0.515 *ProP* LmxM.21.0340 119 GHGEVCK|RY 0.060 . LmxM.21.0340 120 HGEVCKR|YL 0.235 . LmxM.21.0340 125 KRYLSWK|AE 0.082 . LmxM.21.0340 129 SWKAEGR|RD 0.084 . LmxM.21.0340 130 WKAEGRR|DM 0.181 . LmxM.21.0340 135 RRDMWEK|PF 0.076 . LmxM.21.0340 148 TGVVAPR|FH 0.099 . LmxM.21.0340 156 HESDIER|FR 0.126 . LmxM.21.0340 158 SDIERFR|DT 0.146 . LmxM.21.0340 169 NQLEEMR|WQ 0.082 . LmxM.21.0340 174 MRWQCPR|EY 0.097 . LmxM.21.0340 188 ELVAFSK|EP 0.062 . LmxM.21.0340 195 EPLGAPR|MV 0.104 . LmxM.21.0340 199 APRMVPR|MA 0.163 . LmxM.21.0340 204 PRMANDR|CN 0.122 . LmxM.21.0340 208 NDRCNHK|AL 0.062 . LmxM.21.0340 222 ANFQPSR|IV 0.122 . LmxM.21.0340 241 LIAAYEK|LP 0.056 . LmxM.21.0340 245 YEKLPYK|HS 0.068 . LmxM.21.0340 255 EAPHHAR|AA 0.151 . LmxM.21.0340 260 ARAAAPK|LS 0.085 . LmxM.21.0340 274 AQFYAGR|QN 0.089 . LmxM.21.0340 282 NVEYESR|AA 0.088 . LmxM.21.0340 307 GVPTYGR|DE 0.099 . LmxM.21.0340 312 GRDECAK|QY 0.085 . LmxM.21.0340 321 ATALVTR|EI 0.097 . LmxM.21.0340 329 IYEEAMR|SA 0.159 . LmxM.21.0340 335 RSAHGSR|AS 0.127 . LmxM.21.0340 348 GAQVFYR|PY 0.143 . LmxM.21.0340 361 LIGYTVR|GA 0.116 . LmxM.21.0340 369 APAEVEK|MI 0.077 . LmxM.21.0340 388 VDVAVVK|RA 0.065 . LmxM.21.0340 389 DVAVVKR|AA 0.329 . LmxM.21.0340 397 AHCAHVR|LL 0.099 . LmxM.21.0340 407 EQVEVTR|DY 0.121 . LmxM.21.0340 432 AISGVTK|AN 0.069 . LmxM.21.0340 440 NVEEAMK|KM 0.056 . LmxM.21.0340 441 VEEAMKK|MV 0.159 . LmxM.21.0340 446 KKMVAQK|PA 0.084 . ____________________________^_________________

  • Fasta :-

    >LmxM.21.0340 ATGCTGCGCGCGACGTCTCGCTTGGGTATCTACGAGTACCAGTTTGGCCAGCCTTCGCTG AAGAACGCCTTCAGCACAAGGATCGCGCCGGCTGCCAAGGCGCGCAGTCCCGGTACGGTG CAGTCGACCAAGCTAACGAATGGTGTGCGTGTAGTGTCGCACGACCTCGACGGTCCGGTC ACGTCCATCGGCGTTTATGCGGATGCGGGACCGAAGTACGACCCCATCGCCACCCCCGGC CTGAGCTACGTCATGCGCTTCGCCCTGCAGACCTCCAACATGGACAGCTCCCTCTTCCAG ATCGACCGCACGATGCGCTCCACCGGCAACGCGTACGGCCACGGCGAGGTGTGCAAGCGC TATTTAAGCTGGAAGGCGGAGGGCCGCCGTGACATGTGGGAGAAGCCGTTTGAGATGCTC GCCACCGGCGTCGTCGCGCCGCGCTTCCACGAGAGCGATATTGAGCGCTTCCGCGACACG ATGGACAACCAGCTGGAGGAGATGCGCTGGCAGTGCCCTCGCGAATACGCTATCGACCAG CTGGAGCTGGTGGCCTTCTCCAAGGAGCCGCTCGGGGCGCCGCGCATGGTGCCTCGCATG GCAAATGACCGCTGCAACCACAAGGCGCTGCTAGACCATTGGGCCGCCAACTTCCAGCCC AGTCGCATCGTCCTGGCTGGTGTGAATGTGCCGCACGACGCCCTGATAGCCGCCTACGAG AAGCTGCCGTACAAGCACTCGGCCGAGGCCCCCCACCACGCGCGCGCCGCCGCGCCGAAG CTGTCCCACAGCAACGAAGCGGCCCAGTTCTACGCGGGTCGGCAGAACGTCGAGTACGAG AGCCGCGCCGCTGTCATGGGCACAATGCCCGACATGCAGGCAGAGGTGATCGGTGCCGTC GGCGTGCCAACCTACGGCCGTGACGAGTGCGCCAAGCAATACGCGACGGCGCTGGTGACG CGCGAGATCTACGAGGAGGCGATGCGCAGCGCGCATGGCAGCCGTGCCAGCTCGGAGCAC TACGGCGCGCAGGTCTTCTACCGCCCATACTCGTCTGCCGGCCTGATCGGCTACACTGTG CGCGGTGCGCCGGCCGAGGTGGAGAAAATGATTCAGGTCGCCTCCAGCGCCTTTCCGGCC GCCGTCGACGTGGCGGTCGTGAAGCGCGCGGCCCACTGCGCGCACGTGCGCCTGCTGCAT GAGCAGGTCGAAGTGACACGCGACTACTGCGACTTCCTCGCCACATCGCCCAACTCAGTC GAGGAACTCGTGCAGGCGATCAGCGGGGTCACGAAGGCTAACGTGGAGGAGGCGATGAAG AAGATGGTCGCGCAGAAGCCGGCTACCTACGCGACAGGCGACAGCTTCACGTTTCCCATA GTCGCGTCGCTGAGCCACGCTTAA
  • Download Fasta

  • Fasta :-

    MLRATSRLGIYEYQFGQPSLKNAFSTRIAPAAKARSPGTVQSTKLTNGVRVVSHDLDGPV TSIGVYADAGPKYDPIATPGLSYVMRFALQTSNMDSSLFQIDRTMRSTGNAYGHGEVCKR YLSWKAEGRRDMWEKPFEMLATGVVAPRFHESDIERFRDTMDNQLEEMRWQCPREYAIDQ LELVAFSKEPLGAPRMVPRMANDRCNHKALLDHWAANFQPSRIVLAGVNVPHDALIAAYE KLPYKHSAEAPHHARAAAPKLSHSNEAAQFYAGRQNVEYESRAAVMGTMPDMQAEVIGAV GVPTYGRDECAKQYATALVTREIYEEAMRSAHGSRASSEHYGAQVFYRPYSSAGLIGYTV RGAPAEVEKMIQVASSAFPAAVDVAVVKRAAHCAHVRLLHEQVEVTRDYCDFLATSPNSV EELVQAISGVTKANVEEAMKKMVAQKPATYATGDSFTFPIVASLSHA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.21.0340419 STSPNSVEEL0.997unspLmxM.21.0340419 STSPNSVEEL0.997unspLmxM.21.0340419 STSPNSVEEL0.997unspLmxM.21.0340123 SKRYLSWKAE0.995unspLmxM.21.0340338 SSRASSEHYG0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India