LmxM.21.1700 | proteasome alpha 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.21.1700OTHER0.9980310.0012400.000729
No Results

  • Fasta :-

    >LmxM.21.1700 MSEAFYGLTTFSPSGKLVQIEYATTAAGKGSTALGVKATDGVVIAAKKKAPSTLVDASSI QKVFVLDEHVGCTYSGMGPDCRVLIDAARKYCQQYRLMYSEPIPISQLVRKISALYQEFT QSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATAIGTGSPDAKAFLEKRYTVDM ELEDAVHTALLTLKEGFDGQMTSENTQVGRVLGNRFEVLSVDQLRDYLDQI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/320 Sequence name : 320 Sequence length : 231 VALUES OF COMPUTED PARAMETERS Coef20 : 3.816 CoefTot : -1.540 ChDiff : -3 ZoneTo : 55 KR : 6 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.835 1.018 0.076 0.451 MesoH : -0.273 0.314 -0.310 0.221 MuHd_075 : 17.772 11.625 5.145 3.793 MuHd_095 : 28.464 18.451 8.240 5.498 MuHd_100 : 29.252 14.340 8.105 4.305 MuHd_105 : 27.613 22.488 7.900 6.373 Hmax_075 : 10.237 11.550 1.607 4.156 Hmax_095 : 13.300 14.175 2.329 4.428 Hmax_100 : 12.800 13.700 2.424 4.220 Hmax_105 : 13.767 13.300 3.063 4.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9623 0.0377 DFMC : 0.9567 0.0433
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 231 LmxM.21.1700 MSEAFYGLTTFSPSGKLVQIEYATTAAGKGSTALGVKATDGVVIAAKKKAPSTLVDASSIQKVFVLDEHVGCTYSGMGPD 80 CRVLIDAARKYCQQYRLMYSEPIPISQLVRKISALYQEFTQSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATA 160 IGTGSPDAKAFLEKRYTVDMELEDAVHTALLTLKEGFDGQMTSENTQVGRVLGNRFEVLSVDQLRDYLDQI 240 ................................................................................ 80 ................................................................................ 160 ....................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.21.1700 16 TFSPSGK|LV 0.097 . LmxM.21.1700 29 ATTAAGK|GS 0.064 . LmxM.21.1700 37 STALGVK|AT 0.070 . LmxM.21.1700 47 GVVIAAK|KK 0.060 . LmxM.21.1700 48 VVIAAKK|KA 0.082 . LmxM.21.1700 49 VIAAKKK|AP 0.115 . LmxM.21.1700 62 DASSIQK|VF 0.057 . LmxM.21.1700 82 GMGPDCR|VL 0.088 . LmxM.21.1700 89 VLIDAAR|KY 0.102 . LmxM.21.1700 90 LIDAARK|YC 0.088 . LmxM.21.1700 96 KYCQQYR|LM 0.077 . LmxM.21.1700 110 PISQLVR|KI 0.117 . LmxM.21.1700 111 ISQLVRK|IS 0.087 . LmxM.21.1700 126 TQSGGVR|PF 0.141 . LmxM.21.1700 157 GTFWAWK|AT 0.078 . LmxM.21.1700 169 TGSPDAK|AF 0.087 . LmxM.21.1700 174 AKAFLEK|RY 0.064 . LmxM.21.1700 175 KAFLEKR|YT 0.210 . LmxM.21.1700 194 TALLTLK|EG 0.071 . LmxM.21.1700 210 ENTQVGR|VL 0.099 . LmxM.21.1700 215 GRVLGNR|FE 0.087 . LmxM.21.1700 225 LSVDQLR|DY 0.122 . ____________________________^_________________

  • Fasta :-

    >LmxM.21.1700 ATGTCTGAGGCATTTTATGGTCTGACGACGTTTAGTCCTTCAGGAAAGCTGGTTCAGATT GAGTATGCGACGACAGCTGCCGGAAAAGGGTCAACTGCGCTGGGGGTGAAGGCCACCGAT GGGGTCGTCATTGCTGCGAAGAAGAAGGCTCCATCTACCCTAGTGGATGCCTCATCAATT CAGAAGGTCTTCGTCTTAGATGAGCACGTTGGCTGCACCTACAGCGGCATGGGCCCAGAC TGCCGTGTTCTTATCGACGCCGCTCGGAAGTACTGCCAGCAGTACAGGCTAATGTACAGC GAGCCCATTCCGATCAGCCAGCTGGTACGGAAGATCAGCGCTCTCTACCAGGAATTTACG CAGTCTGGCGGTGTCCGTCCCTTCGGATGCTCTCTCCTGGTCGCTGGGGTGGATGCTAAC GGCTACCATTTATATCAGGTGGACCCTAGCGGGACGTTCTGGGCCTGGAAGGCGACGGCG ATCGGCACCGGAAGTCCGGACGCGAAGGCATTCCTAGAAAAGCGTTACACTGTGGACATG GAGCTGGAGGATGCTGTGCACACCGCATTGTTGACGCTAAAGGAGGGCTTTGATGGCCAG ATGACGTCAGAAAACACTCAGGTCGGTCGTGTCTTAGGAAACCGTTTCGAAGTCCTGAGC GTCGATCAGCTGCGCGATTACCTGGACCAGATTTAG
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  • Fasta :-

    MSEAFYGLTTFSPSGKLVQIEYATTAAGKGSTALGVKATDGVVIAAKKKAPSTLVDASSI QKVFVLDEHVGCTYSGMGPDCRVLIDAARKYCQQYRLMYSEPIPISQLVRKISALYQEFT QSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATAIGTGSPDAKAFLEKRYTVDM ELEDAVHTALLTLKEGFDGQMTSENTQVGRVLGNRFEVLSVDQLRDYLDQI

  • title: active site
  • coordinates: S31,K47,K49,K62,T163
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India