LmxM.21.1830 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.21.1830OTHER0.9998690.0000710.000059
No Results

  • Fasta :-

    >LmxM.21.1830 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVI PSSMSKIMEVDSHIAAVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IRFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSI FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDSKLHMYTPTEIKAIMS RMPE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/399 Sequence name : 399 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 3.598 CoefTot : 0.111 ChDiff : -9 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.635 1.412 -0.036 0.468 MesoH : -0.436 0.555 -0.314 0.231 MuHd_075 : 25.215 13.992 6.120 5.424 MuHd_095 : 21.259 12.127 5.893 4.467 MuHd_100 : 17.996 13.742 4.133 4.822 MuHd_105 : 14.435 14.041 2.842 5.116 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.200 5.600 0.820 3.320 Hmax_100 : 2.400 2.900 -1.503 2.760 Hmax_105 : -5.300 3.000 -3.944 2.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9307 0.0693 DFMC : 0.9206 0.0794
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 LmxM.21.1830 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVIPSSMSKIMEVDSHIAAVMSG 80 MVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLSIRFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSG 160 THTRYDAQAIGGGAEAAQSIFTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDSKLHMYTPTEIKAIMS 240 RMPE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.21.1830 5 --MFTSK|SE 0.076 . LmxM.21.1830 10 SKSEYDR|GV 0.163 . LmxM.21.1830 20 TFSPEGR|IF 0.122 . LmxM.21.1830 32 YAVEAIK|LG 0.063 . LmxM.21.1830 41 STSLGIR|TP 0.093 . LmxM.21.1830 52 VVLAAEK|RV 0.060 . LmxM.21.1830 53 VLAAEKR|VP 0.131 . LmxM.21.1830 66 IPSSMSK|IM 0.067 . LmxM.21.1830 86 GMVADAR|IL 0.086 . LmxM.21.1830 93 ILVEHAR|VE 0.101 . LmxM.21.1830 100 VESQNHR|FT 0.128 . LmxM.21.1830 122 TCDLSIR|FG 0.095 . LmxM.21.1830 129 FGESGGK|RK 0.053 . LmxM.21.1830 130 GESGGKR|KL 0.188 . LmxM.21.1830 131 ESGGKRK|LM 0.087 . LmxM.21.1830 135 KRKLMSR|PF 0.118 . LmxM.21.1830 149 IAGVDEK|GP 0.060 . LmxM.21.1830 164 PSGTHTR|YD 0.147 . LmxM.21.1830 184 QSIFTER|YH 0.092 . LmxM.21.1830 187 FTERYHR|NM 0.166 . LmxM.21.1830 203 LAVDILK|QV 0.077 . LmxM.21.1830 221 IEVAVVR|AD 0.131 . LmxM.21.1830 226 VRADDSK|LH 0.061 . LmxM.21.1830 236 YTPTEIK|AI 0.060 . LmxM.21.1830 241 IKAIMSR|MP 0.103 . ____________________________^_________________

  • Fasta :-

    >LmxM.21.1830 ATGTTCACCTCCAAGTCTGAGTACGACCGCGGCGTGAACACCTTCAGCCCGGAGGGTCGC ATTTTCCAGATCGAGTATGCTGTGGAGGCGATCAAACTGGGTAGTACCAGCCTCGGAATC CGCACGCCCGAGGGCGTCGTTCTTGCCGCGGAGAAACGCGTGCCATCGACCTTGGTCATC CCGTCCAGCATGAGTAAGATTATGGAGGTCGACAGCCACATTGCGGCTGTCATGAGCGGC ATGGTTGCAGATGCGCGCATCCTTGTCGAGCACGCCCGCGTGGAGTCGCAGAACCACCGC TTCACCTACAACGAGCCCATGTCTGTGGAGTCCTGCACGCTAGCGACGTGCGACCTGTCG ATCCGGTTTGGTGAGAGCGGTGGCAAGCGCAAGCTCATGTCACGCCCGTTCGGCGTGTCG CTGCTCATCGCCGGCGTAGATGAAAAGGGCCCGCAGCTGTGGCAGACAGACCCCAGCGGC ACGCACACGCGCTATGACGCCCAAGCCATTGGTGGCGGTGCCGAGGCGGCGCAGAGTATC TTCACAGAGCGCTACCACCGAAACATGACGCTGGAGGAGGGCGAGACGCTCGCGGTGGAC ATTCTGAAGCAGGTGATGGAGGACCAGCTGTCGCCGGAGAACATAGAGGTGGCCGTAGTG CGGGCCGACGACAGCAAGCTGCACATGTACACGCCCACAGAGATCAAGGCAATCATGAGT CGCATGCCGGAGTAA
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  • Fasta :-

    MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVI PSSMSKIMEVDSHIAAVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IRFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSI FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDSKLHMYTPTEIKAIMS RMPE

  • title: active site
  • coordinates: S35,E51,R53,K66,G172
No Results
No Results
IDSitePeptideScoreMethod
LmxM.21.1830211 SEDQLSPENI0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India