LmxM.23.0460 | trypanothione synthetase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmxM.23.0460OTHER0.9999590.0000360.000004
No Results

  • Fasta :-

    >LmxM.23.0460 MGCTSSAEAKPNEPHSSSARLPRNPVTKPPDLMGTLRHPRPGAREGAGFNPENAAGAEHI SPPIATARSSSRVSAVTLHGVCGYTRNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVE FARRWLWVTHRLLLPERKCAYCFASCTYAYRLKKDPSPLSQRARAAMQGAATEVKHLGPC ENKDAWEKVPAKFVKQGSRVPPVADSLIVYPMSWGSPWGHIGVITAVDLDRNCVYVADQN RYFHHWNGKFCSAVFQLDCDKGRFYVRDHESECLGWLAFPAAVEGHDVWGAGDRAPLKA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/631 Sequence name : 631 Sequence length : 299 VALUES OF COMPUTED PARAMETERS Coef20 : 3.635 CoefTot : 0.115 ChDiff : 10 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.076 -0.029 0.579 MesoH : -0.620 0.001 -0.412 0.155 MuHd_075 : 9.547 1.851 2.007 0.963 MuHd_095 : 3.287 2.030 2.606 0.326 MuHd_100 : 3.357 3.258 3.021 0.440 MuHd_105 : 4.228 4.512 2.841 0.728 Hmax_075 : 2.450 -2.800 -0.444 0.473 Hmax_095 : 2.000 -2.975 -1.220 0.520 Hmax_100 : 2.000 -3.600 -1.220 0.520 Hmax_105 : 7.000 -1.400 -0.521 1.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9891 0.0109 DFMC : 0.9490 0.0510
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 299 LmxM.23.0460 MGCTSSAEAKPNEPHSSSARLPRNPVTKPPDLMGTLRHPRPGAREGAGFNPENAAGAEHISPPIATARSSSRVSAVTLHG 80 VCGYTRNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVEFARRWLWVTHRLLLPERKCAYCFASCTYAYRLKKDPSPLS 160 QRARAAMQGAATEVKHLGPCENKDAWEKVPAKFVKQGSRVPPVADSLIVYPMSWGSPWGHIGVITAVDLDRNCVYVADQN 240 RYFHHWNGKFCSAVFQLDCDKGRFYVRDHESECLGWLAFPAAVEGHDVWGAGDRAPLKA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.23.0460 10 TSSAEAK|PN 0.092 . LmxM.23.0460 20 PHSSSAR|LP 0.084 . LmxM.23.0460 23 SSARLPR|NP 0.341 . LmxM.23.0460 28 PRNPVTK|PP 0.076 . LmxM.23.0460 37 DLMGTLR|HP 0.091 . LmxM.23.0460 40 GTLRHPR|PG 0.212 . LmxM.23.0460 44 HPRPGAR|EG 0.088 . LmxM.23.0460 68 PPIATAR|SS 0.174 . LmxM.23.0460 72 TARSSSR|VS 0.112 . LmxM.23.0460 86 GVCGYTR|NG 0.072 . LmxM.23.0460 104 NTWTSTK|NF 0.072 . LmxM.23.0460 107 TSTKNFR|EG 0.090 . LmxM.23.0460 123 QCVEFAR|RW 0.093 . LmxM.23.0460 124 CVEFARR|WL 0.112 . LmxM.23.0460 131 WLWVTHR|LL 0.087 . LmxM.23.0460 137 RLLLPER|KC 0.072 . LmxM.23.0460 138 LLLPERK|CA 0.076 . LmxM.23.0460 151 SCTYAYR|LK 0.070 . LmxM.23.0460 153 TYAYRLK|KD 0.059 . LmxM.23.0460 154 YAYRLKK|DP 0.282 . LmxM.23.0460 162 PSPLSQR|AR 0.083 . LmxM.23.0460 164 PLSQRAR|AA 0.290 . LmxM.23.0460 175 GAATEVK|HL 0.086 . LmxM.23.0460 183 LGPCENK|DA 0.079 . LmxM.23.0460 188 NKDAWEK|VP 0.057 . LmxM.23.0460 192 WEKVPAK|FV 0.109 . LmxM.23.0460 195 VPAKFVK|QG 0.092 . LmxM.23.0460 199 FVKQGSR|VP 0.066 . LmxM.23.0460 231 TAVDLDR|NC 0.082 . LmxM.23.0460 241 YVADQNR|YF 0.101 . LmxM.23.0460 249 FHHWNGK|FC 0.085 . LmxM.23.0460 261 FQLDCDK|GR 0.062 . LmxM.23.0460 263 LDCDKGR|FY 0.099 . LmxM.23.0460 267 KGRFYVR|DH 0.105 . LmxM.23.0460 294 VWGAGDR|AP 0.080 . LmxM.23.0460 298 GDRAPLK|A- 0.068 . ____________________________^_________________

  • Fasta :-

    >LmxM.23.0460 ATGGGATGCACATCATCTGCAGAAGCAAAACCCAACGAACCACATTCGTCTTCAGCTCGT CTACCCCGAAACCCCGTGACGAAACCTCCCGATCTGATGGGCACGCTGCGCCATCCGCGT CCGGGCGCGCGTGAAGGGGCCGGCTTCAACCCTGAAAACGCCGCCGGTGCCGAGCACATC AGCCCGCCCATCGCCACGGCCCGCAGCAGCAGCCGGGTTAGTGCTGTTACCCTCCATGGC GTCTGTGGCTACACCCGAAACGGCGTGCCTGCGTACAGCAATGGCACCTCGAACACATGG ACGAGCACGAAGAACTTCCGCGAAGGCATCTTCATGGGGTACCAGTGGCAGTGTGTCGAG TTCGCCAGGCGGTGGCTCTGGGTGACGCACCGACTGTTGCTGCCGGAGCGTAAATGCGCC TACTGCTTTGCTAGTTGCACGTACGCATACCGACTCAAGAAGGACCCATCACCCCTCTCG CAGCGGGCACGTGCGGCGATGCAGGGGGCTGCGACAGAGGTGAAGCACCTTGGACCGTGC GAGAACAAAGACGCCTGGGAAAAGGTACCCGCCAAGTTCGTGAAGCAAGGCTCACGGGTG CCTCCGGTGGCGGACAGCTTGATTGTCTACCCGATGAGCTGGGGTAGTCCGTGGGGACAC ATCGGTGTCATCACCGCCGTTGACCTGGATCGAAACTGTGTCTACGTTGCAGATCAAAAC CGCTACTTTCATCACTGGAACGGCAAGTTCTGCAGCGCCGTCTTTCAGCTGGACTGCGAC AAGGGCCGATTCTACGTACGCGACCACGAGAGCGAGTGCTTGGGGTGGCTAGCATTCCCA GCTGCGGTGGAGGGGCACGACGTGTGGGGTGCCGGTGACCGGGCGCCGCTGAAGGCATGA
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  • Fasta :-

    MGCTSSAEAKPNEPHSSSARLPRNPVTKPPDLMGTLRHPRPGAREGAGFNPENAAGAEHI SPPIATARSSSRVSAVTLHGVCGYTRNGVPAYSNGTSNTWTSTKNFREGIFMGYQWQCVE FARRWLWVTHRLLLPERKCAYCFASCTYAYRLKKDPSPLSQRARAAMQGAATEVKHLGPC ENKDAWEKVPAKFVKQGSRVPPVADSLIVYPMSWGSPWGHIGVITAVDLDRNCVYVADQN RYFHHWNGKFCSAVFQLDCDKGRFYVRDHESECLGWLAFPAAVEGHDVWGAGDRAPLKA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.23.046070 STARSSSRVS0.992unspLmxM.23.046071 SARSSSRVSA0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India