LmxM.23.0950 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LmxM.23.0950mTP0.0257210.0001520.974127CS pos: 41-42. HFL-TT. Pr: 0.2185
No Results

  • Fasta :-

    >LmxM.23.0950 MLRRVLSRGPLPRSLSVGPATKLTANRGKLAKSRGVHVHFLTTSECAAAAGDASVPIPPG FTGKAGEVDFQTVWTTAQDPAAAESAVTKRGRKTTGARLAGEKPAELVAGMGAHSTVRDY RLAVTAAVRKAKVCNAAWVSLHPPKQDVFTMTDPYHPPQRLKGHEMVEKTAIFAVTGAYQ YDRLKSSTLASKDPAKTSSTRARRAESRAKQPAAPQPPMELVVASSNAQAVRAGEVIGHC VNDARNLGNLREDEGVPEFYVEWAKKYMIPEGIKVRKVLRGQQLEEAGLHLMYNVGRGSR YEPYLMVLEYIGNPRSSATTAIVGKGVTFDCGGLNIKPYNSMETMHSDMMGAATAFCTLK AIAKLQLPINVVAAVGLVENAIGPESYHPSSIITSLKGLTVEVLNTDAEGRLVLADVFTY VQRYAPLDKKPTRIIDLATLTGAIVVGLGSRRAGLFSPSATLASSLMAAGTQCGEELWPM PIGDEHKDMMKGGIADLINAAPGRQAGSCTAAAFISNFVEPEVQWAHLDIAGVADVGDKP KGYDPAGVTGFGVQLLVDFLRHNKP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/308 Sequence name : 308 Sequence length : 565 VALUES OF COMPUTED PARAMETERS Coef20 : 4.432 CoefTot : -0.063 ChDiff : 12 ZoneTo : 44 KR : 9 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.641 1.765 0.274 0.659 MesoH : 0.066 0.672 -0.217 0.312 MuHd_075 : 53.962 28.832 11.219 12.023 MuHd_095 : 22.206 12.760 7.486 4.875 MuHd_100 : 18.089 14.098 6.886 4.205 MuHd_105 : 22.939 17.698 8.576 5.275 Hmax_075 : 16.567 18.550 2.654 6.020 Hmax_095 : 10.400 10.300 -1.355 2.500 Hmax_100 : 0.400 5.600 -1.073 3.550 Hmax_105 : 10.500 10.200 1.409 3.063 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0219 0.9781 DFMC : 0.0200 0.9800 This protein is probably imported in mitochondria. f(Ser) = 0.1136 f(Arg) = 0.1364 CMi = 0.43554 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 565 LmxM.23.0950 MLRRVLSRGPLPRSLSVGPATKLTANRGKLAKSRGVHVHFLTTSECAAAAGDASVPIPPGFTGKAGEVDFQTVWTTAQDP 80 AAAESAVTKRGRKTTGARLAGEKPAELVAGMGAHSTVRDYRLAVTAAVRKAKVCNAAWVSLHPPKQDVFTMTDPYHPPQR 160 LKGHEMVEKTAIFAVTGAYQYDRLKSSTLASKDPAKTSSTRARRAESRAKQPAAPQPPMELVVASSNAQAVRAGEVIGHC 240 VNDARNLGNLREDEGVPEFYVEWAKKYMIPEGIKVRKVLRGQQLEEAGLHLMYNVGRGSRYEPYLMVLEYIGNPRSSATT 320 AIVGKGVTFDCGGLNIKPYNSMETMHSDMMGAATAFCTLKAIAKLQLPINVVAAVGLVENAIGPESYHPSSIITSLKGLT 400 VEVLNTDAEGRLVLADVFTYVQRYAPLDKKPTRIIDLATLTGAIVVGLGSRRAGLFSPSATLASSLMAAGTQCGEELWPM 480 PIGDEHKDMMKGGIADLINAAPGRQAGSCTAAAFISNFVEPEVQWAHLDIAGVADVGDKPKGYDPAGVTGFGVQLLVDFL 560 RHNKP 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ..... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.23.0950 3 ----MLR|RV 0.084 . LmxM.23.0950 4 ---MLRR|VL 0.133 . LmxM.23.0950 8 LRRVLSR|GP 0.090 . LmxM.23.0950 13 SRGPLPR|SL 0.307 . LmxM.23.0950 22 SVGPATK|LT 0.058 . LmxM.23.0950 27 TKLTANR|GK 0.094 . LmxM.23.0950 29 LTANRGK|LA 0.072 . LmxM.23.0950 32 NRGKLAK|SR 0.119 . LmxM.23.0950 34 GKLAKSR|GV 0.183 . LmxM.23.0950 64 PPGFTGK|AG 0.076 . LmxM.23.0950 89 AESAVTK|RG 0.067 . LmxM.23.0950 90 ESAVTKR|GR 0.221 . LmxM.23.0950 92 AVTKRGR|KT 0.102 . LmxM.23.0950 93 VTKRGRK|TT 0.246 . LmxM.23.0950 98 RKTTGAR|LA 0.118 . LmxM.23.0950 103 ARLAGEK|PA 0.073 . LmxM.23.0950 118 GAHSTVR|DY 0.111 . LmxM.23.0950 121 STVRDYR|LA 0.259 . LmxM.23.0950 129 AVTAAVR|KA 0.075 . LmxM.23.0950 130 VTAAVRK|AK 0.076 . LmxM.23.0950 132 AAVRKAK|VC 0.172 . LmxM.23.0950 145 VSLHPPK|QD 0.061 . LmxM.23.0950 160 PYHPPQR|LK 0.105 . LmxM.23.0950 162 HPPQRLK|GH 0.099 . LmxM.23.0950 169 GHEMVEK|TA 0.073 . LmxM.23.0950 183 GAYQYDR|LK 0.095 . LmxM.23.0950 185 YQYDRLK|SS 0.067 . LmxM.23.0950 192 SSTLASK|DP 0.061 . LmxM.23.0950 196 ASKDPAK|TS 0.068 . LmxM.23.0950 201 AKTSSTR|AR 0.083 . LmxM.23.0950 203 TSSTRAR|RA 0.195 . LmxM.23.0950 204 SSTRARR|AE 0.399 . LmxM.23.0950 208 ARRAESR|AK 0.127 . LmxM.23.0950 210 RAESRAK|QP 0.066 . LmxM.23.0950 232 SNAQAVR|AG 0.133 . LmxM.23.0950 245 HCVNDAR|NL 0.111 . LmxM.23.0950 251 RNLGNLR|ED 0.078 . LmxM.23.0950 265 FYVEWAK|KY 0.059 . LmxM.23.0950 266 YVEWAKK|YM 0.111 . LmxM.23.0950 274 MIPEGIK|VR 0.052 . LmxM.23.0950 276 PEGIKVR|KV 0.122 . LmxM.23.0950 277 EGIKVRK|VL 0.103 . LmxM.23.0950 280 KVRKVLR|GQ 0.098 . LmxM.23.0950 297 LMYNVGR|GS 0.101 . LmxM.23.0950 300 NVGRGSR|YE 0.135 . LmxM.23.0950 315 EYIGNPR|SS 0.095 . LmxM.23.0950 325 TTAIVGK|GV 0.086 . LmxM.23.0950 337 CGGLNIK|PY 0.065 . LmxM.23.0950 360 TAFCTLK|AI 0.068 . LmxM.23.0950 364 TLKAIAK|LQ 0.062 . LmxM.23.0950 397 SIITSLK|GL 0.070 . LmxM.23.0950 411 NTDAEGR|LV 0.100 . LmxM.23.0950 423 VFTYVQR|YA 0.077 . LmxM.23.0950 429 RYAPLDK|KP 0.061 . LmxM.23.0950 430 YAPLDKK|PT 0.083 . LmxM.23.0950 433 LDKKPTR|II 0.117 . LmxM.23.0950 451 VVGLGSR|RA 0.076 . LmxM.23.0950 452 VGLGSRR|AG 0.088 . LmxM.23.0950 487 PIGDEHK|DM 0.081 . LmxM.23.0950 491 EHKDMMK|GG 0.066 . LmxM.23.0950 504 INAAPGR|QA 0.152 . LmxM.23.0950 539 VADVGDK|PK 0.060 . LmxM.23.0950 541 DVGDKPK|GY 0.091 . LmxM.23.0950 561 LLVDFLR|HN 0.092 . LmxM.23.0950 564 DFLRHNK|P- 0.096 . ____________________________^_________________

  • Fasta :-

    >LmxM.23.0950 ATGCTTCGTCGCGTGCTGTCTCGCGGCCCACTCCCACGGTCGCTGTCGGTGGGCCCCGCG ACGAAGCTGACGGCGAACAGAGGCAAGCTCGCCAAGAGTCGTGGCGTTCATGTGCACTTT CTCACCACCTCCGAGTGTGCAGCGGCGGCCGGTGATGCTAGCGTCCCTATTCCGCCAGGC TTTACCGGCAAGGCAGGGGAGGTCGACTTCCAGACCGTCTGGACGACCGCGCAGGATCCG GCCGCAGCGGAGAGCGCTGTGACGAAGCGTGGCCGAAAGACAACCGGGGCCAGGCTCGCT GGGGAAAAGCCTGCCGAGCTCGTGGCGGGGATGGGCGCCCACTCCACGGTGCGGGATTAC CGCCTCGCGGTCACGGCCGCCGTGCGCAAAGCCAAGGTGTGCAACGCCGCGTGGGTGTCG CTGCACCCGCCGAAGCAAGATGTCTTTACGATGACGGACCCGTACCACCCGCCGCAGCGG CTGAAGGGCCACGAGATGGTGGAGAAAACCGCGATCTTTGCGGTGACGGGGGCGTACCAG TACGACCGCCTGAAATCGAGCACCCTCGCCTCCAAGGATCCTGCAAAGACGAGCAGCACC CGCGCGAGGCGGGCGGAATCGCGGGCCAAGCAGCCCGCCGCTCCACAGCCGCCAATGGAG CTTGTCGTGGCGTCGAGCAATGCGCAGGCGGTGCGCGCGGGTGAGGTGATCGGGCACTGC GTCAACGACGCCCGGAACCTCGGCAACCTGCGCGAGGACGAAGGTGTGCCGGAGTTCTAT GTGGAGTGGGCGAAGAAATACATGATACCAGAGGGCATCAAAGTGCGCAAGGTGCTGCGC GGACAGCAGCTCGAGGAGGCGGGCTTGCACCTCATGTACAACGTCGGCCGCGGCTCTCGC TATGAGCCGTACTTGATGGTGCTTGAGTACATCGGCAATCCCCGCTCGAGCGCGACGACG GCCATCGTGGGCAAGGGCGTGACCTTCGACTGCGGCGGCCTGAACATCAAGCCCTATAAC TCGATGGAGACGATGCACAGCGACATGATGGGGGCGGCCACCGCCTTCTGCACTCTCAAG GCGATCGCGAAACTGCAGTTGCCCATCAACGTTGTGGCTGCGGTCGGACTCGTGGAGAAC GCCATCGGCCCCGAAAGCTACCACCCCTCCTCCATCATTACTAGCCTCAAGGGGCTCACG GTGGAGGTGCTCAACACCGACGCTGAGGGTCGCCTGGTACTCGCAGATGTGTTCACGTAC GTGCAGAGGTACGCACCGCTCGATAAGAAGCCTACCCGCATCATCGACCTTGCGACTCTC ACGGGTGCCATTGTTGTCGGTCTCGGCTCGCGCCGCGCCGGGCTGTTTTCGCCATCTGCG ACGCTGGCGAGTTCGCTGATGGCTGCCGGCACGCAGTGCGGGGAGGAGCTGTGGCCGATG CCGATCGGTGACGAGCACAAGGACATGATGAAGGGGGGCATTGCCGACTTGATCAACGCT GCTCCCGGTCGGCAGGCCGGCTCTTGCACCGCCGCCGCGTTCATCTCCAACTTTGTAGAG CCGGAGGTGCAGTGGGCGCACCTCGACATCGCCGGCGTGGCAGATGTCGGAGATAAGCCC AAAGGCTACGATCCGGCTGGGGTGACGGGCTTCGGCGTGCAGCTTCTGGTCGACTTCCTG CGCCACAATAAGCCTTAA
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  • Fasta :-

    MLRRVLSRGPLPRSLSVGPATKLTANRGKLAKSRGVHVHFLTTSECAAAAGDASVPIPPG FTGKAGEVDFQTVWTTAQDPAAAESAVTKRGRKTTGARLAGEKPAELVAGMGAHSTVRDY RLAVTAAVRKAKVCNAAWVSLHPPKQDVFTMTDPYHPPQRLKGHEMVEKTAIFAVTGAYQ YDRLKSSTLASKDPAKTSSTRARRAESRAKQPAAPQPPMELVVASSNAQAVRAGEVIGHC VNDARNLGNLREDEGVPEFYVEWAKKYMIPEGIKVRKVLRGQQLEEAGLHLMYNVGRGSR YEPYLMVLEYIGNPRSSATTAIVGKGVTFDCGGLNIKPYNSMETMHSDMMGAATAFCTLK AIAKLQLPINVVAAVGLVENAIGPESYHPSSIITSLKGLTVEVLNTDAEGRLVLADVFTY VQRYAPLDKKPTRIIDLATLTGAIVVGLGSRRAGLFSPSATLASSLMAAGTQCGEELWPM PIGDEHKDMMKGGIADLINAAPGRQAGSCTAAAFISNFVEPEVQWAHLDIAGVADVGDKP KGYDPAGVTGFGVQLLVDFLRHNKP

  • title: Substrate-binding/catalytic site
  • coordinates: K325,D330,K337,D348,D407,E409,R411,L440
No Results
No Results
IDSitePeptideScoreMethod
LmxM.23.0950299 SVGRGSRYEP0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India