LmxM.24.0420 | ubiquitin carboxyl-terminal hydrolase, putative,cysteine peptidase, Clan CA, family C12, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.24.0420OTHER0.9999580.0000380.000004
No Results

  • Fasta :-

    >LmxM.24.0420 MPSNESHWCLIESDPAVFREIIQTVGVKGVSVEDLIMLNPSMLEQYEHVYGLVLLFKWQS SEQAPPLGTVVKDAPVFFAKQVIHNACATLAIMNTLCNYPDQVELGPKVQRYLNFCQELD PEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVFHFASFVYRHGHIWELDGLQE GPLQCREATDANYREALVEVVQRRIDDIAARDTTGAGQGICFSLMTIVDDPVTVLEKKIA ALRAEEKPTTALDEELAEMLSLRKKDQEANARRRHDYNAMIVALLKSLAERGKLEKIVAE VQAKVSK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/52 Sequence name : 52 Sequence length : 307 VALUES OF COMPUTED PARAMETERS Coef20 : 3.527 CoefTot : -0.275 ChDiff : -14 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.953 1.482 0.149 0.526 MesoH : -0.212 0.466 -0.347 0.285 MuHd_075 : 10.591 6.454 1.794 2.263 MuHd_095 : 8.419 8.751 4.684 1.220 MuHd_100 : 8.563 7.871 5.184 1.130 MuHd_105 : 8.517 7.136 5.173 1.610 Hmax_075 : 6.600 5.017 -0.147 2.730 Hmax_095 : 3.150 5.775 0.512 2.340 Hmax_100 : 10.000 9.100 2.728 3.320 Hmax_105 : 10.800 9.900 3.060 2.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9826 0.0174 DFMC : 0.9797 0.0203
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 307 LmxM.24.0420 MPSNESHWCLIESDPAVFREIIQTVGVKGVSVEDLIMLNPSMLEQYEHVYGLVLLFKWQSSEQAPPLGTVVKDAPVFFAK 80 QVIHNACATLAIMNTLCNYPDQVELGPKVQRYLNFCQELDPEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVF 160 HFASFVYRHGHIWELDGLQEGPLQCREATDANYREALVEVVQRRIDDIAARDTTGAGQGICFSLMTIVDDPVTVLEKKIA 240 ALRAEEKPTTALDEELAEMLSLRKKDQEANARRRHDYNAMIVALLKSLAERGKLEKIVAEVQAKVSK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.24.0420 19 SDPAVFR|EI 0.102 . LmxM.24.0420 28 IQTVGVK|GV 0.079 . LmxM.24.0420 57 GLVLLFK|WQ 0.066 . LmxM.24.0420 72 PLGTVVK|DA 0.077 . LmxM.24.0420 80 APVFFAK|QV 0.096 . LmxM.24.0420 108 QVELGPK|VQ 0.054 . LmxM.24.0420 111 LGPKVQR|YL 0.090 . LmxM.24.0420 124 ELDPEMR|GS 0.067 . LmxM.24.0420 135 DSFDELR|EA 0.099 . LmxM.24.0420 149 PHSAFTK|DG 0.067 . LmxM.24.0420 155 KDGPSPK|DA 0.102 . LmxM.24.0420 168 FASFVYR|HG 0.132 . LmxM.24.0420 186 EGPLQCR|EA 0.092 . LmxM.24.0420 194 ATDANYR|EA 0.080 . LmxM.24.0420 203 LVEVVQR|RI 0.099 . LmxM.24.0420 204 VEVVQRR|ID 0.148 . LmxM.24.0420 211 IDDIAAR|DT 0.147 . LmxM.24.0420 237 PVTVLEK|KI 0.058 . LmxM.24.0420 238 VTVLEKK|IA 0.075 . LmxM.24.0420 243 KKIAALR|AE 0.082 . LmxM.24.0420 247 ALRAEEK|PT 0.068 . LmxM.24.0420 263 AEMLSLR|KK 0.100 . LmxM.24.0420 264 EMLSLRK|KD 0.060 . LmxM.24.0420 265 MLSLRKK|DQ 0.173 . LmxM.24.0420 272 DQEANAR|RR 0.088 . LmxM.24.0420 273 QEANARR|RH 0.118 . LmxM.24.0420 274 EANARRR|HD 0.138 . LmxM.24.0420 286 MIVALLK|SL 0.072 . LmxM.24.0420 291 LKSLAER|GK 0.108 . LmxM.24.0420 293 SLAERGK|LE 0.063 . LmxM.24.0420 296 ERGKLEK|IV 0.084 . LmxM.24.0420 304 VAEVQAK|VS 0.062 . LmxM.24.0420 307 VQAKVSK|-- 0.071 . ____________________________^_________________

  • Fasta :-

    >LmxM.24.0420 ATGCCCAGCAATGAGAGCCATTGGTGTTTAATCGAGAGCGATCCGGCGGTGTTCAGGGAA ATCATCCAAACCGTCGGCGTGAAGGGGGTCTCCGTGGAGGACCTCATTATGCTCAACCCC TCGATGCTGGAGCAGTACGAGCACGTCTACGGCCTTGTGTTGCTGTTCAAGTGGCAGTCG TCGGAGCAGGCGCCGCCGCTCGGCACCGTCGTGAAGGACGCGCCGGTGTTCTTCGCCAAG CAGGTGATCCACAACGCCTGCGCTACGCTCGCCATCATGAACACGCTCTGCAACTACCCG GATCAGGTGGAGCTGGGGCCGAAGGTGCAGAGATACCTGAACTTCTGCCAGGAGCTCGAC CCGGAGATGCGCGGCTCGCTTCTGGACAGCTTCGATGAGCTGCGTGAGGCACACAACTCC TTCGCGCCACACTCGGCGTTTACGAAAGACGGGCCGTCGCCAAAGGATGCGGATGTGTTT CACTTCGCCTCCTTTGTATACCGCCACGGACACATCTGGGAGCTCGATGGGCTGCAGGAG GGCCCGCTGCAGTGCCGCGAGGCGACGGACGCAAACTACCGAGAGGCGCTCGTGGAGGTG GTGCAGCGGCGCATCGACGACATTGCAGCGAGGGACACGACGGGTGCCGGTCAGGGCATC TGCTTTTCGCTGATGACGATTGTTGACGACCCGGTCACGGTGCTGGAGAAGAAGATAGCT GCTCTCCGGGCCGAGGAAAAGCCGACGACGGCGCTGGACGAAGAGCTGGCTGAGATGCTG TCACTGCGCAAGAAGGACCAAGAGGCTAACGCGCGTCGCCGTCATGACTACAATGCCATG ATCGTAGCGCTGCTGAAGTCTCTGGCGGAGCGTGGCAAGCTTGAGAAGATCGTTGCGGAG GTGCAGGCAAAGGTCTCCAAGTAG
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  • Fasta :-

    MPSNESHWCLIESDPAVFREIIQTVGVKGVSVEDLIMLNPSMLEQYEHVYGLVLLFKWQS SEQAPPLGTVVKDAPVFFAKQVIHNACATLAIMNTLCNYPDQVELGPKVQRYLNFCQELD PEMRGSLLDSFDELREAHNSFAPHSAFTKDGPSPKDADVFHFASFVYRHGHIWELDGLQE GPLQCREATDANYREALVEVVQRRIDDIAARDTTGAGQGICFSLMTIVDDPVTVLEKKIA ALRAEEKPTTALDEELAEMLSLRKKDQEANARRRHDYNAMIVALLKSLAERGKLEKIVAE VQAKVSK

  • title: catalytic site
  • coordinates: Q81,C87,H161,D176
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.24.0420153 SKDGPSPKDA0.998unspLmxM.24.0420153 SKDGPSPKDA0.998unspLmxM.24.0420153 SKDGPSPKDA0.998unspLmxM.24.042031 SVKGVSVEDL0.997unspLmxM.24.0420126 SEMRGSLLDS0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India