LmxM.25.1790 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmxM.25.1790SP0.0265750.9733390.000086CS pos: 19-20. CLG-AL. Pr: 0.7078
No Results

  • Fasta :-

    >LmxM.25.1790 MNLLRVALLCACTTLLCLGALYYYSVYDYEKHMNMVQRKYTGYDPLTNCATPFGQLLGVA DDVPAYSNCDIKFSSTYINYVNLMDPMDNGRRGDPSETRIIMTAYRYTSFDYGMRWLVWN RGVMPRLVENTNQLWKTVDYFNPARPEQTWSAEYITNYEEVTDVEERKFNAPRRADVIVY RMDKNTIPAGHIAVVVKVEDDVEAAGGPEKLKELKKMRLHPRHVYVAEQNWKNQPWGGHN YSRVLQFKWRTVSEKAHEGSYVDPDGLDIIGVVRVGKAMPLRTAPDPYQEALDMDNDGDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/742 Sequence name : 742 Sequence length : 300 VALUES OF COMPUTED PARAMETERS Coef20 : 4.959 CoefTot : 0.634 ChDiff : -5 ZoneTo : 27 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.935 2.165 0.605 0.651 MesoH : -0.486 0.221 -0.278 0.191 MuHd_075 : 14.278 16.400 4.708 3.550 MuHd_095 : 18.804 12.287 3.382 5.436 MuHd_100 : 18.204 10.639 4.420 4.136 MuHd_105 : 17.023 6.846 5.358 2.768 Hmax_075 : 16.333 18.400 6.113 6.260 Hmax_095 : 15.925 19.425 4.725 6.318 Hmax_100 : 15.800 19.100 5.763 6.120 Hmax_105 : 16.625 19.900 6.412 5.451 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8623 0.1377 DFMC : 0.9140 0.0860
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 300 LmxM.25.1790 MNLLRVALLCACTTLLCLGALYYYSVYDYEKHMNMVQRKYTGYDPLTNCATPFGQLLGVADDVPAYSNCDIKFSSTYINY 80 VNLMDPMDNGRRGDPSETRIIMTAYRYTSFDYGMRWLVWNRGVMPRLVENTNQLWKTVDYFNPARPEQTWSAEYITNYEE 160 VTDVEERKFNAPRRADVIVYRMDKNTIPAGHIAVVVKVEDDVEAAGGPEKLKELKKMRLHPRHVYVAEQNWKNQPWGGHN 240 YSRVLQFKWRTVSEKAHEGSYVDPDGLDIIGVVRVGKAMPLRTAPDPYQEALDMDNDGDL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.25.1790 5 --MNLLR|VA 0.074 . LmxM.25.1790 31 SVYDYEK|HM 0.064 . LmxM.25.1790 38 HMNMVQR|KY 0.136 . LmxM.25.1790 39 MNMVQRK|YT 0.148 . LmxM.25.1790 72 YSNCDIK|FS 0.099 . LmxM.25.1790 91 DPMDNGR|RG 0.098 . LmxM.25.1790 92 PMDNGRR|GD 0.092 . LmxM.25.1790 99 GDPSETR|II 0.101 . LmxM.25.1790 106 IIMTAYR|YT 0.112 . LmxM.25.1790 115 SFDYGMR|WL 0.079 . LmxM.25.1790 121 RWLVWNR|GV 0.126 . LmxM.25.1790 126 NRGVMPR|LV 0.165 . LmxM.25.1790 136 NTNQLWK|TV 0.074 . LmxM.25.1790 145 DYFNPAR|PE 0.072 . LmxM.25.1790 167 VTDVEER|KF 0.074 . LmxM.25.1790 168 TDVEERK|FN 0.099 . LmxM.25.1790 173 RKFNAPR|RA 0.123 . LmxM.25.1790 174 KFNAPRR|AD 0.178 . LmxM.25.1790 181 ADVIVYR|MD 0.093 . LmxM.25.1790 184 IVYRMDK|NT 0.142 . LmxM.25.1790 197 HIAVVVK|VE 0.085 . LmxM.25.1790 210 AAGGPEK|LK 0.059 . LmxM.25.1790 212 GGPEKLK|EL 0.066 . LmxM.25.1790 215 EKLKELK|KM 0.058 . LmxM.25.1790 216 KLKELKK|MR 0.088 . LmxM.25.1790 218 KELKKMR|LH 0.077 . LmxM.25.1790 222 KMRLHPR|HV 0.218 . LmxM.25.1790 232 VAEQNWK|NQ 0.062 . LmxM.25.1790 243 GGHNYSR|VL 0.106 . LmxM.25.1790 248 SRVLQFK|WR 0.086 . LmxM.25.1790 250 VLQFKWR|TV 0.181 . LmxM.25.1790 255 WRTVSEK|AH 0.078 . LmxM.25.1790 274 DIIGVVR|VG 0.068 . LmxM.25.1790 277 GVVRVGK|AM 0.086 . LmxM.25.1790 282 GKAMPLR|TA 0.096 . ____________________________^_________________

  • Fasta :-

    >LmxM.25.1790 ATGAACCTTCTCCGCGTCGCACTGCTCTGTGCGTGCACGACGCTGCTGTGCCTCGGTGCC CTCTACTACTACTCCGTGTACGACTACGAGAAGCACATGAACATGGTGCAACGCAAGTAC ACGGGCTACGATCCGCTGACAAATTGCGCAACGCCGTTCGGGCAGCTCCTCGGTGTCGCC GACGACGTTCCGGCGTACAGCAACTGCGATATAAAGTTTTCCTCAACCTACATCAACTAC GTGAACCTCATGGACCCAATGGACAACGGCCGCCGCGGCGACCCATCCGAGACACGCATT ATCATGACTGCCTACCGCTACACCTCGTTCGACTACGGCATGCGGTGGCTCGTGTGGAAC CGCGGCGTCATGCCGCGCCTCGTCGAAAACACGAATCAGCTGTGGAAGACGGTGGACTAC TTTAACCCCGCAAGACCGGAGCAGACCTGGTCTGCGGAGTACATCACCAACTACGAGGAG GTGACAGACGTGGAGGAGCGCAAGTTCAACGCGCCGCGGAGGGCGGACGTGATCGTCTAC CGCATGGACAAGAATACCATTCCAGCGGGACACATTGCGGTGGTGGTAAAGGTCGAGGAC GACGTCGAAGCGGCCGGCGGCCCAGAGAAGCTGAAGGAGCTGAAGAAGATGCGCCTGCAT CCCCGCCATGTCTACGTGGCAGAGCAAAACTGGAAGAACCAGCCGTGGGGCGGGCACAAC TACAGTCGCGTGTTGCAGTTCAAATGGCGCACCGTATCAGAGAAGGCGCACGAGGGCTCC TATGTCGACCCCGACGGGCTTGATATCATCGGTGTCGTGCGCGTGGGGAAGGCGATGCCC CTGCGTACGGCGCCTGACCCGTACCAAGAGGCGCTCGACATGGATAACGACGGTGACCTC TAA
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  • Fasta :-

    MNLLRVALLCACTTLLCLGALYYYSVYDYEKHMNMVQRKYTGYDPLTNCATPFGQLLGVA DDVPAYSNCDIKFSSTYINYVNLMDPMDNGRRGDPSETRIIMTAYRYTSFDYGMRWLVWN RGVMPRLVENTNQLWKTVDYFNPARPEQTWSAEYITNYEEVTDVEERKFNAPRRADVIVY RMDKNTIPAGHIAVVVKVEDDVEAAGGPEKLKELKKMRLHPRHVYVAEQNWKNQPWGGHN YSRVLQFKWRTVSEKAHEGSYVDPDGLDIIGVVRVGKAMPLRTAPDPYQEALDMDNDGDL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.25.1790261 YHEGSYVDPD0.99unspLmxM.25.1790261 YHEGSYVDPD0.99unspLmxM.25.1790261 YHEGSYVDPD0.99unspLmxM.25.1790253 SWRTVSEKAH0.996unspLmxM.25.1790260 SAHEGSYVDP0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India