LmxM.26.2690 | peptidase with unknown catalytic mechanism (family U48)

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmxM.26.2690OTHER0.5573630.3065250.136111
No Results

  • Fasta :-

    >LmxM.26.2690 MCCVASGAYLAFIAAPLRAAQRQSTLLRPIIRSCVSTLLLFAGPIADVCHLGTFDMPESP LLLWRNYVICPIGEELFYRGVLFSLLHRRSSPGRIFVSAFLFSLSHMHHLVSMACDAYRN CEDKDVNGSDRDEKEHACWRSAGQTMCGIFVFTALFGLLSGYYYEHVCEGSIIAIAAAHA LCNAIGPPEFTILRSRHCTAREKVSSAAVYVAGIVGWAWTLLRY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/314 Sequence name : 314 Sequence length : 224 VALUES OF COMPUTED PARAMETERS Coef20 : 4.683 CoefTot : 1.385 ChDiff : 2 ZoneTo : 46 KR : 4 DE : 0 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.247 1.841 0.450 0.731 MesoH : 0.225 0.797 -0.081 0.356 MuHd_075 : 50.237 26.866 12.329 11.529 MuHd_095 : 33.764 27.778 9.500 8.962 MuHd_100 : 44.274 28.384 11.988 10.892 MuHd_105 : 49.572 29.185 12.364 11.877 Hmax_075 : 10.938 23.900 3.112 4.783 Hmax_095 : 19.163 20.650 6.330 7.184 Hmax_100 : 10.100 15.400 3.091 4.580 Hmax_105 : 10.413 14.525 2.912 4.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0068 0.9932 DFMC : 0.0051 0.9949 This protein is probably imported in mitochondria. f(Ser) = 0.0870 f(Arg) = 0.0870 CMi = 0.45351 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 224 LmxM.26.2690 MCCVASGAYLAFIAAPLRAAQRQSTLLRPIIRSCVSTLLLFAGPIADVCHLGTFDMPESPLLLWRNYVICPIGEELFYRG 80 VLFSLLHRRSSPGRIFVSAFLFSLSHMHHLVSMACDAYRNCEDKDVNGSDRDEKEHACWRSAGQTMCGIFVFTALFGLLS 160 GYYYEHVCEGSIIAIAAAHALCNAIGPPEFTILRSRHCTAREKVSSAAVYVAGIVGWAWTLLRY 240 ................................................................................ 80 ................................................................................ 160 ................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.26.2690 18 FIAAPLR|AA 0.088 . LmxM.26.2690 22 PLRAAQR|QS 0.082 . LmxM.26.2690 28 RQSTLLR|PI 0.111 . LmxM.26.2690 32 LLRPIIR|SC 0.111 . LmxM.26.2690 65 SPLLLWR|NY 0.080 . LmxM.26.2690 79 GEELFYR|GV 0.132 . LmxM.26.2690 88 LFSLLHR|RS 0.100 . LmxM.26.2690 89 FSLLHRR|SS 0.175 . LmxM.26.2690 94 RRSSPGR|IF 0.117 . LmxM.26.2690 119 MACDAYR|NC 0.103 . LmxM.26.2690 124 YRNCEDK|DV 0.132 . LmxM.26.2690 131 DVNGSDR|DE 0.097 . LmxM.26.2690 134 GSDRDEK|EH 0.101 . LmxM.26.2690 140 KEHACWR|SA 0.274 . LmxM.26.2690 194 PEFTILR|SR 0.082 . LmxM.26.2690 196 FTILRSR|HC 0.087 . LmxM.26.2690 201 SRHCTAR|EK 0.132 . LmxM.26.2690 203 HCTAREK|VS 0.062 . LmxM.26.2690 223 WAWTLLR|Y- 0.090 . ____________________________^_________________

  • Fasta :-

    >LmxM.26.2690 ATGTGCTGCGTTGCCAGTGGTGCCTACCTTGCATTCATTGCTGCGCCGCTTCGCGCCGCC CAGCGGCAGAGCACTTTGCTGCGCCCGATAATCCGTTCTTGCGTGTCGACACTGTTGCTG TTTGCGGGACCCATTGCGGACGTCTGTCACCTCGGAACCTTCGACATGCCCGAGAGCCCG TTGCTGCTATGGCGAAACTATGTGATCTGCCCAATTGGGGAAGAGCTCTTCTACCGCGGC GTTCTCTTCTCTCTTCTGCACCGCCGTTCCTCTCCAGGGCGCATTTTCGTTTCGGCCTTC CTCTTTTCGCTCTCCCACATGCACCACCTTGTCTCCATGGCGTGTGACGCGTACAGAAAC TGCGAGGACAAAGACGTGAATGGTAGCGACCGCGACGAGAAGGAGCATGCGTGCTGGCGC TCAGCTGGACAGACCATGTGCGGTATCTTTGTCTTTACCGCACTATTCGGACTTCTGAGC GGGTACTATTATGAGCATGTGTGTGAGGGTAGCATTATCGCCATCGCTGCAGCCCACGCC CTGTGCAACGCCATTGGCCCTCCCGAGTTCACGATTCTGCGGAGCCGTCATTGCACTGCA CGTGAGAAGGTGTCAAGCGCAGCGGTGTATGTCGCTGGTATCGTTGGGTGGGCTTGGACG CTGTTGCGCTACTGA
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  • Fasta :-

    MCCVASGAYLAFIAAPLRAAQRQSTLLRPIIRSCVSTLLLFAGPIADVCHLGTFDMPESP LLLWRNYVICPIGEELFYRGVLFSLLHRRSSPGRIFVSAFLFSLSHMHHLVSMACDAYRN CEDKDVNGSDRDEKEHACWRSAGQTMCGIFVFTALFGLLSGYYYEHVCEGSIIAIAAAHA LCNAIGPPEFTILRSRHCTAREKVSSAAVYVAGIVGWAWTLLRY

    No Results
    No Results
No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmxM.26.269091 SHRRSSPGRI0.998unspLmxM.26.2690129 SDVNGSDRDE0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India