LmxM.27.0040 | metallo- peptidase, Clan M- Family M48

_IDPredictionOTHERSPmTPCS_Position
LmxM.27.0040OTHER0.9860440.0070990.006856
No Results

  • Fasta :-

    >LmxM.27.0040 MSSSPNLFLRAAVISLNVIGMWDAYLVLRQRRANQTKEMPLYFRKDITDEEFAKAQAYEG EKSTFSLLQHLKGLVMTNMSIFLRLPALLYYLVAQRTSLPTGSFSHNYAAAVAGELISVV LDIPFSYYENFYIEDRHGFNEMTKTEFVKDIVKTLLLRVTLLYPMQIKLIQFVVQRFGER FPLYLFLGMSVMLVLFLLAMPTVIQPLFNKFTPLDVESPLYKKIDLLSKEMGFPLKKVLV VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNL AMALGQFMLISYGARLVVFDKRVYEAFGFHEVDPMIGLNIFAEMFYEPLSTFIGYGFCYV SRRHEFQADRFAVTHNHGEGMKKALLVITKENRASLTPDPLYSALHYTHPPVLERLQEID AELKKRG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/654 Sequence name : 654 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.572 CoefTot : 0.439 ChDiff : 2 ZoneTo : 37 KR : 5 DE : 1 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.506 2.571 0.403 0.868 MesoH : 0.173 1.010 -0.213 0.379 MuHd_075 : 19.403 15.816 4.935 5.191 MuHd_095 : 26.144 13.461 6.616 5.227 MuHd_100 : 26.447 13.804 6.822 5.640 MuHd_105 : 30.141 13.075 6.434 5.469 Hmax_075 : 18.500 23.200 4.315 8.517 Hmax_095 : 14.700 14.788 2.797 5.110 Hmax_100 : 15.300 15.700 2.771 5.360 Hmax_105 : 20.067 22.167 3.669 7.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8121 0.1879 DFMC : 0.6691 0.3309
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 LmxM.27.0040 MSSSPNLFLRAAVISLNVIGMWDAYLVLRQRRANQTKEMPLYFRKDITDEEFAKAQAYEGEKSTFSLLQHLKGLVMTNMS 80 IFLRLPALLYYLVAQRTSLPTGSFSHNYAAAVAGELISVVLDIPFSYYENFYIEDRHGFNEMTKTEFVKDIVKTLLLRVT 160 LLYPMQIKLIQFVVQRFGERFPLYLFLGMSVMLVLFLLAMPTVIQPLFNKFTPLDVESPLYKKIDLLSKEMGFPLKKVLV 240 VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNLAMALGQFMLISYGARLVVFD 320 KRVYEAFGFHEVDPMIGLNIFAEMFYEPLSTFIGYGFCYVSRRHEFQADRFAVTHNHGEGMKKALLVITKENRASLTPDP 400 LYSALHYTHPPVLERLQEIDAELKKRG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.27.0040 10 SPNLFLR|AA 0.166 . LmxM.27.0040 29 DAYLVLR|QR 0.081 . LmxM.27.0040 31 YLVLRQR|RA 0.084 . LmxM.27.0040 32 LVLRQRR|AN 0.475 . LmxM.27.0040 37 RRANQTK|EM 0.067 . LmxM.27.0040 44 EMPLYFR|KD 0.074 . LmxM.27.0040 45 MPLYFRK|DI 0.167 . LmxM.27.0040 54 TDEEFAK|AQ 0.068 . LmxM.27.0040 62 QAYEGEK|ST 0.075 . LmxM.27.0040 72 SLLQHLK|GL 0.064 . LmxM.27.0040 84 NMSIFLR|LP 0.069 . LmxM.27.0040 96 YYLVAQR|TS 0.065 . LmxM.27.0040 136 NFYIEDR|HG 0.076 . LmxM.27.0040 144 GFNEMTK|TE 0.062 . LmxM.27.0040 149 TKTEFVK|DI 0.079 . LmxM.27.0040 153 FVKDIVK|TL 0.051 . LmxM.27.0040 158 VKTLLLR|VT 0.067 . LmxM.27.0040 168 LYPMQIK|LI 0.060 . LmxM.27.0040 176 IQFVVQR|FG 0.092 . LmxM.27.0040 180 VQRFGER|FP 0.074 . LmxM.27.0040 210 IQPLFNK|FT 0.060 . LmxM.27.0040 222 VESPLYK|KI 0.065 . LmxM.27.0040 223 ESPLYKK|ID 0.067 . LmxM.27.0040 229 KIDLLSK|EM 0.059 . LmxM.27.0040 236 EMGFPLK|KV 0.074 . LmxM.27.0040 237 MGFPLKK|VL 0.072 . LmxM.27.0040 245 LVVDGSR|RS 0.070 . LmxM.27.0040 246 VVDGSRR|SH 0.166 . LmxM.27.0040 261 YGFGSNK|RI 0.056 . LmxM.27.0040 262 GFGSNKR|IV 0.150 . LmxM.27.0040 274 TILEQLK|DD 0.063 . LmxM.27.0040 292 HELGHWK|HN 0.067 . LmxM.27.0040 315 LISYGAR|LV 0.096 . LmxM.27.0040 321 RLVVFDK|RV 0.080 . LmxM.27.0040 322 LVVFDKR|VY 0.188 . LmxM.27.0040 362 GFCYVSR|RH 0.081 . LmxM.27.0040 363 FCYVSRR|HE 0.159 . LmxM.27.0040 370 HEFQADR|FA 0.108 . LmxM.27.0040 382 NHGEGMK|KA 0.061 . LmxM.27.0040 383 HGEGMKK|AL 0.100 . LmxM.27.0040 390 ALLVITK|EN 0.065 . LmxM.27.0040 393 VITKENR|AS 0.068 . LmxM.27.0040 415 HPPVLER|LQ 0.075 . LmxM.27.0040 424 EIDAELK|KR 0.057 . LmxM.27.0040 425 IDAELKK|RG 0.081 . LmxM.27.0040 426 DAELKKR|G- 0.217 . ____________________________^_________________

  • Fasta :-

    >LmxM.27.0040 ATGTCATCCTCACCGAATCTCTTTCTGCGAGCGGCCGTCATATCACTCAATGTGATTGGC ATGTGGGATGCCTACCTGGTGCTGCGCCAGCGCCGCGCCAACCAAACCAAGGAGATGCCA TTGTATTTCAGGAAGGACATCACTGACGAGGAGTTTGCGAAGGCGCAGGCGTACGAAGGT GAGAAGAGCACGTTCAGTCTCCTCCAGCATCTGAAGGGGCTCGTGATGACGAACATGAGT ATTTTTCTGCGTCTCCCCGCGCTCCTGTACTACCTTGTTGCGCAGCGCACGAGCTTGCCT ACCGGCTCCTTCTCTCATAACTACGCCGCCGCCGTAGCCGGGGAGTTGATCTCCGTCGTA CTCGACATTCCGTTCTCCTACTACGAGAACTTCTACATTGAGGACCGGCACGGCTTCAAC GAGATGACCAAGACAGAGTTCGTAAAGGACATCGTGAAAACGTTGCTCCTCCGCGTTACG CTGCTGTACCCTATGCAGATCAAGCTCATTCAATTTGTGGTGCAACGCTTTGGTGAGCGC TTTCCCTTATACCTCTTCTTGGGAATGTCTGTGATGCTGGTCTTGTTTCTCCTGGCAATG CCAACGGTTATCCAGCCGCTGTTCAACAAGTTTACCCCGCTCGACGTGGAGTCGCCCCTG TACAAGAAGATTGACCTGCTCAGCAAGGAGATGGGCTTTCCGCTGAAGAAGGTCCTCGTT GTCGATGGCAGCCGCCGCTCGCACCACAGCAACGCCTACTTCTACGGCTTTGGCAGCAAC AAACGTATCGTGCTCTACGACACTATTCTAGAGCAGCTGAAGGATGACGACGAGCCCATC ATTGCCGTGCTCTGCCACGAGCTCGGTCATTGGAAGCACAACCACATCTACGTGAACCTC GCCATGGCCCTTGGTCAGTTCATGTTGATATCCTACGGTGCGCGCCTGGTCGTCTTCGAC AAGAGGGTCTATGAAGCGTTTGGTTTCCATGAGGTGGATCCGATGATCGGGCTTAACATC TTCGCTGAGATGTTCTACGAGCCCCTGAGTACGTTTATCGGATACGGGTTCTGCTATGTT TCGCGGCGGCACGAGTTTCAAGCGGACCGCTTCGCCGTGACGCATAATCATGGTGAGGGA ATGAAGAAGGCCCTCTTAGTGATTACTAAGGAAAACCGTGCCAGCCTAACACCGGATCCA CTGTACTCCGCGCTCCACTACACGCACCCGCCCGTGCTCGAGCGGTTGCAGGAGATTGAC GCGGAGCTCAAGAAGCGGGGGTAG
  • Download Fasta

  • Fasta :-

    MSSSPNLFLRAAVISLNVIGMWDAYLVLRQRRANQTKEMPLYFRKDITDEEFAKAQAYEG EKSTFSLLQHLKGLVMTNMSIFLRLPALLYYLVAQRTSLPTGSFSHNYAAAVAGELISVV LDIPFSYYENFYIEDRHGFNEMTKTEFVKDIVKTLLLRVTLLYPMQIKLIQFVVQRFGER FPLYLFLGMSVMLVLFLLAMPTVIQPLFNKFTPLDVESPLYKKIDLLSKEMGFPLKKVLV VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNL AMALGQFMLISYGARLVVFDKRVYEAFGFHEVDPMIGLNIFAEMFYEPLSTFIGYGFCYV SRRHEFQADRFAVTHNHGEGMKKALLVITKENRASLTPDPLYSALHYTHPPVLERLQEID AELKKRG

    No Results
  • title: Zn binding site
  • coordinates: H286,H290,E365,H409
No Results
No Results
IDSitePeptideScoreMethod
LmxM.27.0040247 SGSRRSHHSN0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India