LmxM.27.0190 | proteasome alpha 7 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.27.0190OTHER0.9999650.0000330.000002
No Results

  • Fasta :-

    >LmxM.27.0190 MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLE KGSNNRIHAVDRQAGICICGLLPDGRAIISRARQEAENSRDIFATPIRGAVLANRVGEFM HVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGYYGVALGKAKTVAKSELEKLD FSSLTCEDAVGKLVSILHDVHDKQKDKLYEVEVAWVCDKSDRKFVHVATDMVPSEASN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/787 Sequence name : 787 Sequence length : 238 VALUES OF COMPUTED PARAMETERS Coef20 : 3.240 CoefTot : -0.736 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.712 1.359 0.243 0.448 MesoH : -0.263 0.308 -0.265 0.250 MuHd_075 : 30.036 10.993 7.198 2.691 MuHd_095 : 16.624 3.616 2.966 1.703 MuHd_100 : 14.115 3.895 1.635 1.876 MuHd_105 : 12.975 6.319 1.465 2.434 Hmax_075 : 9.275 4.900 0.533 2.788 Hmax_095 : 8.100 1.200 -1.176 2.290 Hmax_100 : 8.100 1.200 -1.176 2.290 Hmax_105 : 3.900 2.500 -0.687 2.077 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9873 0.0127 DFMC : 0.9804 0.0196
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 238 LmxM.27.0190 MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLEKGSNNRIHAVDRQAGICICG 80 LLPDGRAIISRARQEAENSRDIFATPIRGAVLANRVGEFMHVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGY 160 YGVALGKAKTVAKSELEKLDFSSLTCEDAVGKLVSILHDVHDKQKDKLYEVEVAWVCDKSDRKFVHVATDMVPSEASN 240 ................................................................................ 80 ................................................................................ 160 .............................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.27.0190 20 VFSAEGR|VF 0.087 . LmxM.27.0190 29 QVEYAGK|AV 0.077 . LmxM.27.0190 43 AVAACCK|DG 0.063 . LmxM.27.0190 52 VVVAVEK|IH 0.055 . LmxM.27.0190 57 EKIHTSR|ML 0.123 . LmxM.27.0190 61 TSRMLEK|GS 0.087 . LmxM.27.0190 66 EKGSNNR|IH 0.074 . LmxM.27.0190 72 RIHAVDR|QA 0.175 . LmxM.27.0190 86 GLLPDGR|AI 0.092 . LmxM.27.0190 91 GRAIISR|AR 0.140 . LmxM.27.0190 93 AIISRAR|QE 0.074 . LmxM.27.0190 100 QEAENSR|DI 0.114 . LmxM.27.0190 108 IFATPIR|GA 0.093 . LmxM.27.0190 115 GAVLANR|VG 0.072 . LmxM.27.0190 130 TTHFAYR|PF 0.121 . LmxM.27.0190 167 YGVALGK|AK 0.061 . LmxM.27.0190 169 VALGKAK|TV 0.085 . LmxM.27.0190 173 KAKTVAK|SE 0.086 . LmxM.27.0190 178 AKSELEK|LD 0.070 . LmxM.27.0190 192 CEDAVGK|LV 0.071 . LmxM.27.0190 203 LHDVHDK|QK 0.068 . LmxM.27.0190 205 DVHDKQK|DK 0.070 . LmxM.27.0190 207 HDKQKDK|LY 0.072 . LmxM.27.0190 219 VAWVCDK|SD 0.075 . LmxM.27.0190 222 VCDKSDR|KF 0.083 . LmxM.27.0190 223 CDKSDRK|FV 0.142 . ____________________________^_________________

  • Fasta :-

    >LmxM.27.0190 ATGGCGGGCACAGGCAGCGGTCACGATCAGTCTACGGACGTATTTTCGGCCGAAGGACGC GTGTTCCAAGTGGAGTACGCCGGCAAGGCTGTCGACAACAGCAGCACCGCCGTTGCAGCA TGCTGCAAGGACGGCGTTGTCGTTGCGGTGGAAAAGATTCACACGAGCCGCATGCTGGAG AAAGGCTCGAACAACCGCATCCACGCCGTAGACCGCCAGGCCGGCATTTGCATCTGCGGT CTCCTTCCGGACGGGCGCGCGATTATCTCTCGCGCGCGGCAGGAGGCGGAGAATAGTCGC GACATTTTCGCCACCCCCATCCGCGGTGCGGTGCTGGCAAACCGCGTGGGGGAGTTCATG CACGTGTACACCACACACTTTGCGTACCGCCCGTTCGGGTGCTCGGCCATCATTGCGTCG TATGCTGATGACGGACCGCAGCTGTTCGTTAGTGATCCCAGTGGCACGGTGGCCGGGTAC TACGGTGTTGCGCTCGGCAAGGCCAAGACAGTGGCAAAGAGCGAGCTGGAGAAGCTGGAC TTTTCCAGCCTCACTTGCGAGGATGCGGTAGGGAAGCTGGTCAGCATCCTTCACGATGTG CACGACAAGCAGAAGGACAAGCTTTACGAGGTGGAAGTTGCGTGGGTCTGCGACAAGTCG GATCGCAAGTTCGTCCACGTCGCGACTGACATGGTTCCGTCGGAAGCGTCGAACTGA
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  • Fasta :-

    MAGTGSGHDQSTDVFSAEGRVFQVEYAGKAVDNSSTAVAACCKDGVVVAVEKIHTSRMLE KGSNNRIHAVDRQAGICICGLLPDGRAIISRARQEAENSRDIFATPIRGAVLANRVGEFM HVYTTHFAYRPFGCSAIIASYADDGPQLFVSDPSGTVAGYYGVALGKAKTVAKSELEKLD FSSLTCEDAVGKLVSILHDVHDKQKDKLYEVEVAWVCDKSDRKFVHVATDMVPSEASN

  • title: active site
  • coordinates: S35,E51,I53,R66,K167
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India