LmxM.28.0110 | proteasome beta 3 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmxM.28.0110OTHER0.9982010.0013150.000484
No Results

  • Fasta :-

    >LmxM.28.0110 MSIMSYSGGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNDSIVYGLTGLRTDQ QTFVNKVQFRTDMYKLREERNITGKAFSSMITSMLYEARFGPWFVEPVIGSIDKSTGKVY LCATDLIGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSL SGYGAVAMIVTKDKITTRLIKGRKD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/88 Sequence name : 88 Sequence length : 205 VALUES OF COMPUTED PARAMETERS Coef20 : 3.974 CoefTot : -0.290 ChDiff : -2 ZoneTo : 17 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.171 0.072 0.462 MesoH : -0.298 0.325 -0.240 0.252 MuHd_075 : 11.818 2.511 3.259 0.832 MuHd_095 : 18.007 12.741 4.840 3.658 MuHd_100 : 14.967 9.246 3.416 2.673 MuHd_105 : 7.863 4.357 2.630 1.319 Hmax_075 : 12.367 5.833 0.583 3.520 Hmax_095 : 16.400 13.100 2.272 4.700 Hmax_100 : 16.000 10.500 1.437 3.940 Hmax_105 : 11.600 7.000 1.228 3.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9677 0.0323 DFMC : 0.9206 0.0794
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 205 LmxM.28.0110 MSIMSYSGGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNDSIVYGLTGLRTDQQTFVNKVQFRTDMYKLREER 80 NITGKAFSSMITSMLYEARFGPWFVEPVIGSIDKSTGKVYLCATDLIGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSP 160 EEVFEIAAQAMLSACDRDSLSGYGAVAMIVTKDKITTRLIKGRKD 240 ................................................................................ 80 ................................................................................ 160 ............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.28.0110 17 VMAMAGK|EC 0.067 . LmxM.28.0110 26 FVIISDK|RL 0.077 . LmxM.28.0110 27 VIISDKR|LG 0.117 . LmxM.28.0110 33 RLGEQLK|TI 0.080 . LmxM.28.0110 41 ISTEVPK|LH 0.057 . LmxM.28.0110 57 YGLTGLR|TD 0.062 . LmxM.28.0110 66 QQTFVNK|VQ 0.058 . LmxM.28.0110 70 VNKVQFR|TD 0.109 . LmxM.28.0110 75 FRTDMYK|LR 0.062 . LmxM.28.0110 77 TDMYKLR|EE 0.096 . LmxM.28.0110 80 YKLREER|NI 0.238 . LmxM.28.0110 85 ERNITGK|AF 0.091 . LmxM.28.0110 99 SMLYEAR|FG 0.085 . LmxM.28.0110 114 VIGSIDK|ST 0.099 . LmxM.28.0110 118 IDKSTGK|VY 0.057 . LmxM.28.0110 155 MCEALWR|PG 0.087 . LmxM.28.0110 177 MLSACDR|DS 0.136 . LmxM.28.0110 192 VAMIVTK|DK 0.071 . LmxM.28.0110 194 MIVTKDK|IT 0.070 . LmxM.28.0110 198 KDKITTR|LI 0.086 . LmxM.28.0110 201 ITTRLIK|GR 0.113 . LmxM.28.0110 203 TRLIKGR|KD 0.116 . LmxM.28.0110 204 RLIKGRK|D- 0.101 . ____________________________^_________________

  • Fasta :-

    >LmxM.28.0110 ATGTCTATTATGTCATACAGCGGCGGCTCGGTGATGGCCATGGCGGGTAAAGAGTGCTTC GTTATCATATCCGATAAACGCCTCGGTGAGCAGCTGAAGACTATCTCGACGGAGGTGCCG AAGCTGCATGTTGTTAACGACAGCATTGTGTACGGCCTCACCGGCCTGCGCACGGACCAG CAAACCTTTGTAAACAAAGTTCAGTTTCGCACCGACATGTACAAGCTGCGCGAGGAGCGC AACATTACTGGCAAGGCGTTCTCGTCCATGATCACGTCCATGCTGTACGAGGCACGTTTC GGGCCATGGTTCGTGGAGCCGGTGATCGGAAGCATAGATAAGTCGACGGGCAAGGTGTAC CTGTGCGCCACCGACCTCATCGGTGCCCCGTGCGAGCCAGAGGACTATGTCTGTGCCGGC ACCGCTGCTGAGAGCTTGCACGGCATGTGCGAGGCTCTCTGGCGCCCGGGCATGTCTCCG GAGGAGGTTTTTGAGATTGCCGCGCAGGCGATGCTGTCTGCGTGTGATCGCGACAGTCTC TCCGGCTACGGTGCAGTGGCGATGATTGTGACGAAAGACAAAATCACAACGCGCCTCATC AAGGGCCGAAAGGACTAG
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  • Fasta :-

    MSIMSYSGGSVMAMAGKECFVIISDKRLGEQLKTISTEVPKLHVVNDSIVYGLTGLRTDQ QTFVNKVQFRTDMYKLREERNITGKAFSSMITSMLYEARFGPWFVEPVIGSIDKSTGKVY LCATDLIGAPCEPEDYVCAGTAAESLHGMCEALWRPGMSPEEVFEIAAQAMLSACDRDSL SGYGAVAMIVTKDKITTRLIKGRKD

  • title: active site
  • coordinates: G9,D25,R27,K41,T141,D178,S181,G182
No Results
No Results
IDSitePeptideScoreMethod
LmxM.28.0110159 SRPGMSPEEV0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India