LmxM.29.0750 | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmxM.29.0750OTHER0.9998820.0001020.000016
No Results

  • Fasta :-

    >LmxM.29.0750 MNVLVVAADHSEDIELVSIIDVLSRAAIKVTLASVMESKSITLAHGLKVMCDALIGEVSA VEYDAVLLPGGMPGAVHLGNSEALKKILHNARVGKKLYGGICAAPAVVLAPMGLLEGVDT VTCYPSFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHNREMNDVRAIK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/638 Sequence name : 638 Sequence length : 196 VALUES OF COMPUTED PARAMETERS Coef20 : 3.912 CoefTot : 0.270 ChDiff : -2 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.829 1.853 0.404 0.705 MesoH : -0.027 0.889 -0.162 0.346 MuHd_075 : 7.258 1.315 0.552 0.288 MuHd_095 : 13.581 2.248 3.453 0.797 MuHd_100 : 22.352 9.107 5.675 2.609 MuHd_105 : 29.520 15.367 7.408 4.283 Hmax_075 : 0.583 9.450 -1.821 3.617 Hmax_095 : 4.638 9.975 -0.098 3.465 Hmax_100 : 10.100 14.900 1.093 4.740 Hmax_105 : 14.700 17.850 2.480 5.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9856 0.0144 DFMC : 0.9674 0.0326
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 196 LmxM.29.0750 MNVLVVAADHSEDIELVSIIDVLSRAAIKVTLASVMESKSITLAHGLKVMCDALIGEVSAVEYDAVLLPGGMPGAVHLGN 80 SEALKKILHNARVGKKLYGGICAAPAVVLAPMGLLEGVDTVTCYPSFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYF 160 ALAVVSILKSPDLAERLAKAMLVDHNREMNDVRAIK 240 ................................................................................ 80 ................................................................................ 160 .................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmxM.29.0750 25 IIDVLSR|AA 0.109 . LmxM.29.0750 29 LSRAAIK|VT 0.067 . LmxM.29.0750 39 ASVMESK|SI 0.081 . LmxM.29.0750 48 TLAHGLK|VM 0.068 . LmxM.29.0750 85 GNSEALK|KI 0.071 . LmxM.29.0750 86 NSEALKK|IL 0.109 . LmxM.29.0750 92 KILHNAR|VG 0.077 . LmxM.29.0750 95 HNARVGK|KL 0.237 . LmxM.29.0750 96 NARVGKK|LY 0.114 . LmxM.29.0750 130 YPSFEDK|LP 0.070 . LmxM.29.0750 136 KLPSSVK|YS 0.066 . LmxM.29.0750 144 STNAVVK|SE 0.078 . LmxM.29.0750 152 ENCLTSR|GP 0.103 . LmxM.29.0750 169 AVVSILK|SP 0.069 . LmxM.29.0750 176 SPDLAER|LA 0.100 . LmxM.29.0750 179 LAERLAK|AM 0.109 . LmxM.29.0750 187 MLVDHNR|EM 0.100 . LmxM.29.0750 193 REMNDVR|AI 0.108 . LmxM.29.0750 196 NDVRAIK|-- 0.125 . ____________________________^_________________

  • Fasta :-

    >LmxM.29.0750 ATGAACGTTCTTGTCGTCGCGGCTGATCACTCCGAGGACATCGAGCTCGTCAGTATTATT GACGTCCTCTCTCGCGCTGCCATCAAGGTCACACTCGCTTCTGTGATGGAGTCGAAGTCC ATTACGCTGGCACACGGATTGAAGGTGATGTGCGATGCTCTGATTGGAGAAGTCTCTGCG GTTGAATACGACGCGGTGCTCCTTCCCGGTGGCATGCCAGGAGCCGTTCATCTCGGCAAC AGCGAAGCGCTGAAGAAGATTCTGCACAACGCCCGGGTGGGGAAAAAGCTGTACGGCGGA ATCTGCGCTGCTCCCGCCGTCGTTCTTGCTCCTATGGGACTGTTGGAGGGTGTGGATACC GTCACTTGCTACCCCAGCTTTGAGGATAAGCTGCCCTCTTCGGTCAAGTACTCCACAAAC GCTGTTGTGAAGTCAGAGAACTGTCTCACCAGCCGCGGCCCCGGCACCGCCATCTACTTT GCGCTTGCCGTTGTTTCGATTCTCAAGTCACCTGACCTGGCTGAGAGGCTCGCCAAGGCC ATGCTTGTGGATCACAACAGGGAGATGAACGACGTGCGCGCCATCAAGTAA
  • Download Fasta

  • Fasta :-

    MNVLVVAADHSEDIELVSIIDVLSRAAIKVTLASVMESKSITLAHGLKVMCDALIGEVSA VEYDAVLLPGGMPGAVHLGNSEALKKILHNARVGKKLYGGICAAPAVVLAPMGLLEGVDT VTCYPSFEDKLPSSVKYSTNAVVKSENCLTSRGPGTAIYFALAVVSILKSPDLAERLAKA MLVDHNREMNDVRAIK

  • title: conserved cys residue
  • coordinates: C102
No Results
No Results
IDSitePeptideScoreMethod
LmxM.29.0750134 SKLPSSVKYS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India